Query= MSMg01no117_k24.b1 MSMg01no117_k24.b1 CHROMAT_FILE:
MSMg01no117_k24.b1 PHD_FILE: MSMg01no117_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:19 2005
(578 letters)
>mm_chr13_48179474_48180452
Length = 979
Score = 1056 bits (546), Expect = 0.0
Identities = 570/580 (98%), Gaps = 6/580 (1%)
Strand = Plus / Plus
Query: 3 ggaattcctgagtgtgttc---cgattgtgtctctgaatcttgttacttttcttgggctc 59
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcctgagtgtg--caaacgattgtgtctctgaatcttgttacttttcttgggctc 259
Query: 60 ttttctgtttgttttgttcaattgtgatgtcttgggttttgtcctgtctttttattttat 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 260 ttttctgtttgttttgttcaattgtgatgtcttgggttttgtcctatctttttattttat 319
Query: 120 catatcttattttactttattcgtatcccttagaagcctgtttgttttccaatgagagac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 catatcttattttactttattcgtatcccttagaagcctgtttgttttccaatgagagac 379
Query: 180 agaaaaggaacaaatttaggtgggaggtgaagtggggaggaagtcgagggagaggaaacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaaaaggaacaaatttaggtgggaggtgaagtggggaggaagtcgagggagaggaaacc 439
Query: 240 atattcagaatatagtacatgaggggtcaaaaatctactttctattaaaagaacaaaaaa 299
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 atattcaggatatagtacatgaggggtcaaaaatctactttcgattaaaagaacaaaaaa 499
Query: 300 -catgatactgaacacttaaagctccatgactaagttaaagaagagattaaaattaaatt 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccatgatactgaacacttaaagctccatgactaagttaaagaagagattaaaattaaatt 559
Query: 359 aaagaaggctgtaactgaagtatttacctgaggaaatttcacaggacatagtgctaaaat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaagaaggctgtaactgaagtatttacctgaggaaatttcacaggacatagtgctaaaat 619
Query: 419 caccaaaacagaaatatacatggctggctagatggaccactgagtagcggagcctgagtc 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 caccaaaacagaaatatacatggctggctagatggaccactgagtagcggtgcctgagtc 679
Query: 479 caacccctgagacccacacagtagaaaaagagaatgaactctgcaaatcatcctctgatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 caacccctgagacccacacagtagaaaaagagaatgaactctgcaaatcatcctctgatt 739
Query: 539 tctatgtacacacaagcacacacacacacatgcatgtgaa 578
||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctatgtacacacaagcacacacacacacatgcatgtgaa 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 979
Length adjustment: 10
Effective length of query: 568
Effective length of database: 969
Effective search space: 550392
Effective search space used: 550392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_k24.g1 MSMg01no117_k24.g1 CHROMAT_FILE:
MSMg01no117_k24.g1 PHD_FILE: MSMg01no117_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:19 2005
(618 letters)
>mm_chr13_48279553_48280570
Length = 1018
Score = 1125 bits (582), Expect = 0.0
Identities = 609/618 (98%)
Strand = Plus / Minus
Query: 1 ccctaacctttcacttgagtggcatctctctttaaatccaccacgtctgtttcttcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ccctaacctttcacttgagtggcatctctctttaaatccaccacgtctgtttcttcagct 665
Query: 61 cctccctgtgagggattctgtgagttaattaatccatttaacagcaggcactggcagtaa 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctcactgtgagggattctgtgagttaattaatccatttaacagcaggcactggcagtaa 605
Query: 121 gatcagagacttcagaaactcctgctcactgagaacagggaatggatgtttgtgggacct 180
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gaccagagacttcagaaagtcctgctcactgagaacagggaatggatgtttgtgggacct 545
Query: 181 taatggcccagagttatggagggagggtcagtccaggaagctttaaccctggatacttca 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 544 taatggcccagagttatggagggagggtcagtccaggaagcttcaaccctggatacttca 485
Query: 241 aatatgaggacagcaggagttggctccctcccctctcccagcctggcaccataaagccgg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 484 aatatgaggacagcaggagttggctccctcccctctcccagcctggcaccataaagccag 425
Query: 301 ctgccccaatcctagcagggatgtagtgcactgacagttatcaggcttcacggcttgttt 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctgccccaatcctagtagggatgtagtgcactgacagttatcaggcttcacggcttgttt 365
Query: 361 aaccttagaaggttcccaccacacacacaccctacagcccctgagtatgtagatgaagca 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 364 aaccttagaaggttcccaccacacacacaccctacagcccctgagtgtgtagatgaagca 305
Query: 421 tcttccaacaatttattaatatctatttccttaagaatttactcattcctgagactggcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcttccaacaatttattaatatctatttccttaagaatttactcattcctgagactggcc 245
Query: 481 caggttgcccagtaatgagtaaattcttaaggaagttgagatcttcttgcagaggacctg 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 caggttgcccagtaatgagtaaattcttaaggaagttaagatcttcttgcagaggacctg 185
Query: 541 agtttggttcccagaacccacagggcagctcacaaccctctgcaattctagctccagagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 184 agtttggttcccagaacccacagggcagctcacaaccctctgcaattctagctccagggg 125
Query: 601 atttgaaggcatcctctg 618
||||||||||||||||||
Sbjct: 124 atttgaaggcatcctctg 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
