Query= MSMg01no118_e11.b1 MSMg01no118_e11.b1 CHROMAT_FILE:
MSMg01no118_e11.b1 PHD_FILE: MSMg01no118_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:05 2005
(651 letters)
>mm_chr13_42649907_42650962
Length = 1056
Score = 905 bits (468), Expect = 0.0
Identities = 554/594 (93%), Gaps = 25/594 (4%)
Strand = Plus / Minus
Query: 5 gaattccataggtatcagttcactcataggagtaccatgattaatgccacaggctgtagc 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaattccataggcgtgagttcactcataggagtaccatgattaatgccacaggctgtagc 530
Query: 65 tgcaagcctaccaaaaaagtggggaggggtggaacctcccacaattattgcagcaatgct 124
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct: 529 tgcaagcctaccaaaaaagttgggaggggtggaaactcccacaattattgcagcattgct 470
Query: 125 aaaatagggtgatagacttcttacctggaataagacaatggtaacctgtaccaaaaaaa- 183
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 469 aaaatagggtgatagactttttacctggaataagacaatggtaacctataccaaaaaaat 410
Query: 184 -aaaaaaaa-aagttcagatcttccctttcaagagaataagctgtaccaaatccaaattc 241
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 taataataataagttcagatcttccctttcaagagaataagctgtaccaaatccaaattc 350
Query: 242 agcaaacaaaatatcaaggcaaatttcaccaatcataccctaccttataaacccttcccc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agcaaacaaaatatcaaggcaaatttcaccaatcataccctaccttataaacccttcccc 290
Query: 302 --tggggctaatagaaagaactggactagctcatacacttatgaaactctttaatgtctc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cctggggctaatagaaagaactggactagctcatacacttatgaaactctttaatgtctc 230
Query: 360 tgaaagtgatttcag-------------tttttttttttctgaacgtgatctgtccctca 406
||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct: 229 tgaaagtgatttcaggttttgttttgtttttttttttttctgaaagtgatcaatccctca 170
Query: 407 tacccctagggatagaagagatccacagtgcaaggtctttccagagaaagctgaacattc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tacccctagggatagaagagatccacagtgcaaggtctttccagagaaagctgaacattc 110
Query: 467 attattttaaaagatgcaatccagctagggattgaaatttgcctaaagtagaaacataaa 526
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 109 attattttaaaagatgcaatccagctagggattgaaatttgcctaaagtggagacataaa 50
Query: 527 aacggtgg-ttcaaactataaac-ggggaagccaatttctagcctttttatgtt 578
|| || |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 49 aa----ggattcaaactataaacagggga-gccaatttctagcctttttatgtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1056
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1046
Effective search space: 670486
Effective search space used: 670486
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_e11.g1 MSMg01no118_e11.g1 CHROMAT_FILE:
MSMg01no118_e11.g1 PHD_FILE: MSMg01no118_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:05 2005
(284 letters)
>mm_chr13_42508860_42509543
Length = 684
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Plus
Query: 1 ctctaagctgaaacagagccatctgatcaactgcaggtacatgtgtactgtgtcaaaagc 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctaggctgaaacagagccatctgatcaactgcaggtacatgtgtactgtgtcaaaagc 260
Query: 61 attttcaacatcaaaaagctgagaccatcatcctacatggataagttgttgaagagccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttcaacatcaaaaagctgagaccatcatcctacatggataagttgttgaagagccaa 320
Query: 121 gtcacgggtagacagaaactttattttctaaatgctgaggattcaagttgatttgggatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcacgggtagacagaaactttattttctaaatgctgaggattcaagttgatttgggatt 380
Query: 181 tcagaagtatgagagacatgtccggatgatgagtttagaaaggtttcataacagagggaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tcagaagtatgagagacatgtccggatgatgagtttagaaaggtttcataaaagagggaa 440
Query: 241 gtttaggactaggaagatggctcagtgggtactaatcatgagag 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttaggactaggaagatggctcagtgggtactaatcatgagag 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
