BAC Information

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BAC

Clone NameMSMg01-119A18
Chromosome13 (Build37)
Map Location 31,718,510 - 31,876,506
singlet/doubletdoublet
Overlap geneFoxf2
Upstream geneDusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312
Downstream geneFoxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119A18.T7 (MSMg01no119_a18.b1)MSMg01-119A18.TJ (MSMg01no119_a18.g1)
ACCAG329765AG329766
length705704
length of high quality
(start - end)
515 (63 - 577)349 (70 - 418)
definitionCHROMAT_FILE: MSMg01no119_a18.b1 PHD_FILE: MSMg01no119_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:05 2005CHROMAT_FILE: MSMg01no119_a18.g1 PHD_FILE: MSMg01no119_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,718,510 - 31,719,024)(31,876,158 - 31,876,506)
sequence
AATTTGCGGCGCTATACGACTCCTATTGCGAGAAGAGCGCGGAATTCATG
TTTGAGCAGGGTTCGTTCCGCCGCCGGCCGCGCGGCTTCAGGCGGAAGTG
CCAGGCTCTCAAACCCATGTACCATCGCGTGGTGAGCGGCTTGGGCTTCG
GGGCCTCGCTGCTGCCCCAGGGCTTCGACTTCCAAGCGCCCCCTTCGGCG
CCTCTGGGTTGCCACGGTCAAGGCGGTTATGGTGGCCTCGACATGATGCC
CGCGGGCTATGATACAGGGGCGGGTGCTCCGGGCCACGCGCATCCACACC
ACCTCCACCACCTCCTTGTCCCCCACATGTCGCCCAACCCGGGCTCCACC
TATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGCGTCGGTGCGGC
AGCGGGTGGCGGCGGTGGCGGCGGGGACTATGGGCCGGACAGCAGCAGCA
GCCCTGTGCCCTCATCCCCGGCTATGGCAAGCGCCATTGAGTGTCACTCG
CCCTACACTAGCCCTGCGGCACATTGGAGCTCGCCTGGCGCTTCACCTTA
CCTCAAGCAGCCGCCTGCCCTGACGCCGAGCAGTAATCCCGCGGCCTCTG
CTGGTCTGCACCCCAGCATGTCTTCCTACTCGTTGGAGCAGAGCTACTTT
CATTCAGAACGCCCGCGAGGATCTCTCAGGCAATAAAGAGCGCCAAGGTT
GGCTG
TGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAGATGGCCAAATGGCAGTAGGAGGAGGCG
TCATTGTGATTAGGCAACACCCTTGTCTTAGAGAGATCTCTTTGAAGTCC
ACCAAAGCCATCCTCAACCAATATCTGTGGGGGACGCAGCTGAGACAATC
GATGGCATAGGGATGTGAATCTCATTAAAGACCAGCTAGATCAGTGGTTC
TCAACTTTCCTAACGCTGTTATCCTTTAATACAGTCCCTTATATTATGAT
GAGCCCCAACCATAAAATTATTTTGTTGCTACTTCATAATTGTAATTTTC
CTACTGTTATGATTCATAATGTAAATATCTGATATGTACGATATCTGATA
TGTGACCCTGATGTGGTTGCTACCCATAGATGGAACATCACTGAGCTAGA
GTAATTTTATATAGTTGGTTACTCAGATAGTACTAGAGAGAGATGCATGT
AGCTCAGGCTGGTCTTGAACTTTCTATGTAGCTGATGAGAACCTTGAATG
CCTGATCCTCCTGCCCCTACCACCTAAGTTTTGATACTATATATATAAGC
CTCTATAGTTACTAGAATAATGAGCATAGCTACAGGTTGTAAATATTTGG
TGCATGCGTTTGAAACTCCACCTGTACAGCCCTCCTCCCTTCTCTATAAG
GGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_a18.b1 MSMg01no119_a18.b1 CHROMAT_FILE:
MSMg01no119_a18.b1 PHD_FILE: MSMg01no119_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:05 2005
         (515 letters)



>mm_chr13_31718310_31719224
          Length = 915

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgttccgccgccggccgcgcggcttcaggcggaagtgccaggctctcaaacccatgtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcgttccgccgccggccgcgcggcttcaggcggaagtgccaggctctcaaacccatgtac 260

                                                                       
Query: 61  catcgcgtggtgagcggcttgggcttcggggcctcgctgctgccccagggcttcgacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcgcgtggtgagcggcttgggcttcggggcctcgctgctgccccagggcttcgacttc 320

                                                                       
Query: 121 caagcgcccccttcggcgcctctgggttgccacggtcaaggcggttatggtggcctcgac 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagcgcccccgtcggcgcctctgggttgccacggtcaaggcggttatggtggcctcgac 380

                                                                       
Query: 181 atgatgcccgcgggctatgatacaggggcgggtgctccgggccacgcgcatccacaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgatgcccgcgggctatgatacaggggcgggtgctccgggccacgcgcatccacaccac 440

                                                                       
Query: 241 ctccaccacctccttgtcccccacatgtcgcccaacccgggctccacctatatggccagc 300
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccaccaccaccacgtcccccacatgtcgcccaacccgggctccacctatatggccagc 500

                                                                       
Query: 301 tgcccggtgcccgcaggtcctgcgggcgtcggtgcggcagcgggtggcggcggtggcggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcccggtgcccgcaggtcctgcgggcgtcggtgcggcagcgggtggcggcggtggcggc 560

                                                                       
Query: 361 ggggactatgggccggacagcagcagcagccctgtgccctcatccccggctatggcaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggggactatgggccggacagcagcagcagccctgtgccctcatccccggctatggcaagc 620

                                                                       
Query: 421 gccattgagtgtcactcgccctacactagccctgcggcacattggagctcgcctggcgct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccattgagtgtcactcgccctacactagccctgcggcacattggagctcgcctggcgct 680

                                              
Query: 481 tcaccttacctcaagcagccgcctgccctgacgcc 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaccttacctcaagcagccgcctgccctgacgcc 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no119_a18.g1 MSMg01no119_a18.g1 CHROMAT_FILE:
MSMg01no119_a18.g1 PHD_FILE: MSMg01no119_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:05 2005
         (349 letters)



>mm_chr13_31876135_31876883
          Length = 749

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/349 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagatggccaaatggcagtaggaggaggcgtcattgtgattaggcaacacccttgtctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 caagatggccaaatggcagtaggaggaggcgtcattgtgattaggcaacacccttgtctt 313

                                                                       
Query: 61  agagagatctctttgaagtccaccaaagccatcctcaaccaatatctgtgggggacgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 agagagatctctttgaagtccaccaaagccatcctcaaccaatatctgtgggggacgcag 253

                                                                       
Query: 121 ctgagacaatcgatggcatagggatgtgaatctcattaaagaccagctagatcagtggtt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ctgagacaatcgatggcatatggatgtgaatctcattaaagaccagctagatcagtggtt 193

                                                                       
Query: 181 ctcaactttcctaacgctgttatcctttaatacagtcccttatattatgatgagccccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ctcaactttcctaacgctgttatcctttaatacagtcccttatattatgatgagccccaa 133

                                                                       
Query: 241 ccataaaattattttgttgctacttcataattgtaattttcctactgttatgattcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ccataaaattattttgttgctacttcataattgtaattttcctactgttatgattcataa 73

                                                            
Query: 301 tgtaaatatctgatatgtacgatatctgatatgtgaccctgatgtggtt 349
           ||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 72  tgtaaatatctgatatgtaggatatctgatatgtgaccccgatgtggtt 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)