Query= MSMg01no120_f04.b1 MSMg01no120_f04.b1 CHROMAT_FILE:
MSMg01no120_f04.b1 PHD_FILE: MSMg01no120_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:43 2005
(429 letters)
>mm_chr13_118073949_118074777
Length = 829
Score = 611 bits (316), Expect = e-179
Identities = 412/480 (85%), Gaps = 58/480 (12%)
Strand = Plus / Plus
Query: 7 aattctacattgtgcgtagtcaataaggaaaaactaacaatcctgggcgagcaatgtctc 66
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 153 aattctacattgtgtgtagtcaataaggaaaaactaacaatcctgggcaagcaatgtctc 212
Query: 67 aggagtaaagggcttcctaagaagccgggccacccgggttccatacctagcactcacatc 126
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 213 aggagtaaagggcttcctaagaagccgggccacctgggttccatacctagcactcacatc 272
Query: 127 ctgtgaaggagaaaactaagtcccacaggttgttctctgacttctgcatgtgccccccac 186
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 273 ctg-gaaggagaaaactaagtcccacaggttgttctctgacttctgcatgttccccccac 331
Query: 187 acatatgcaaacaaataagacactatttaaaaat---------------------taaa- 224
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 332 acatatgcaaacaaataagacactatttaaaaatgaaaactaaccagaaccgctttaaat 391
Query: 225 ---------------------------------gtggagctttctcccttttctatcccc 251
|||||||||||||||||||||||||||
Sbjct: 392 gctagattatctccctagctattcgttttcaaagtggagctttctcccttttctatcccc 451
Query: 252 attgcatgtttccagagtgaacatgttcccctttgatgaggccccttaaacctttatagc 311
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 attggatggttccagagtgaacatgttcccctttgatgaggccccttaaacctttatagc 511
Query: 312 ttttgaaattctggtttctttctttttacttcttttaaagatttattt--aaataaatgt 369
|||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 512 ttttgaaattctggtttccttctttttatttcttttaaagatttatttttaaataaatgt 571
Query: 370 ctgtgagtacattgtcgctcttcttcagacatatcagaagaggtcattggatcctattac 429
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgtgagtacattgtcactcttcttcagacatatcagaagaggtcattggatcctattac 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_f04.g1 MSMg01no120_f04.g1 CHROMAT_FILE:
MSMg01no120_f04.g1 PHD_FILE: MSMg01no120_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:43 2005
(441 letters)
>mm_chr13_118216319_118217159
Length = 841
Score = 766 bits (396), Expect = 0.0
Identities = 427/442 (96%), Gaps = 10/442 (2%)
Strand = Plus / Minus
Query: 1 tatctgaa-atcatcctctctctcttttttttgttttttttttgtttgttttttatgttt 59
|||||||| |||||||||||||||| ||| ||||||||||| |||||||||||
Sbjct: 693 tatctgaacatcatcctctctctctcttt----ttttttttttg-----tttttatgttt 643
Query: 60 tgcaataaaaaaaggctgtcagcttcagcttcacctctgaaggtaccatggcaataccat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgcaataaaaaaaggctgtcagcttcagcttcacctctgaaggtaccatggcaataccat 583
Query: 120 aaataaccggaagtagcagctaatgtcacattgtaaatcactgggtattgtgtttctgtc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aaataaccggaagtagcagctaatgtcacattgtaaatcactgggtattgtgtttctgtc 523
Query: 180 attaacacgctaagaagatagcaggtcattttctttaacaagctcattcatatcgccctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 522 attaacacgctaagaagatagcaggtcattttctttaacaagctcattcatattgccctt 463
Query: 240 aactaacagtgtgtgaggcaccactttgccctctgtcttctgcatgagtcacatggggtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aactaacagtgtgtgaggcaccactttgccctctgtcttctgcatgagtcacatggggtg 403
Query: 300 atggagaatggtaaatcttccttctgccgtcctccacttcccttcacatcattagtcaca 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 402 atggagaatggtaaatcttccttctgccgtcctccacttcccttcacatcattagtaaca 343
Query: 360 agcagaaacattgcctagagcttcgtttcctctcctggctctttttctcttcttgggaca 419
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 342 agcggaaacattgcctagagcttcgtctcctctcctggctctttttctcttcttgggaca 283
Query: 420 ggtgctaatgagtaacaagatg 441
||||||||||||||||||||||
Sbjct: 282 ggtgctaatgagtaacaagatg 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
