Query= MSMg01no121_f10.b1 MSMg01no121_f10.b1 CHROMAT_FILE:
MSMg01no121_f10.b1 PHD_FILE: MSMg01no121_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:05 2005
(309 letters)
>mm_chr13_89903235_89903943
Length = 709
Score = 551 bits (285), Expect = e-161
Identities = 300/305 (98%)
Strand = Plus / Minus
Query: 5 gaattccaggttcctgaaaactaaatgtagttgctatagttgataactgtacaggaatat 64
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaattccaggctcatgaaaactaaatgtagttgctatagttgataactgtacaggaatat 375
Query: 65 aatgcctaattacatgacaaaatatgtattacaatacaactgtcttgtataatgatgaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aatgcctaattacatgacaaaatatgtattacaatacaactgtcttgtataatgatgaag 315
Query: 125 tcaagaggagatatttccctcagattttaaatatgaaaacaatttcttaggactaatctg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcaagaggagatatttccctcagattttaaatatgaaaacaatttcttaggactaatctg 255
Query: 185 accatggattctttatgagagttgctattaggtatggggccttggaaagagtagacagga 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atcatggattctttatgagagttgctattaggtatggggccttggaaagagtagacagga 195
Query: 245 acctagaataactgtttcctaagaggtttcatccaggagccagtgcaaacaaatgaagag 304
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 194 acctagaataactgtttcctaagaggtttcatccaggacccagtggaaacaaatgaagag 135
Query: 305 atcca 309
|||||
Sbjct: 134 atcca 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no121_f10.g1 MSMg01no121_f10.g1 CHROMAT_FILE:
MSMg01no121_f10.g1 PHD_FILE: MSMg01no121_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:05 2005
(289 letters)
>mm_chr13_89764947_89765632
Length = 686
Score = 513 bits (265), Expect = e-150
Identities = 279/285 (97%), Gaps = 3/285 (1%)
Strand = Plus / Plus
Query: 2 cagctataactgaaaatgtgagcacctgtacatggtgggaacttgtccgggaagcaggag 61
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 202 cagctataactgaaaatgtgagcacctgtacatggtgggaacttgtgcgggaagcaggag 261
Query: 62 gcttcaatacttcaactctaatatattctccaatccaatttgccaggacacagtttttcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcttcaatacttcaactctaatatattctccaatccaatttgccaggacacagtttttcc 321
Query: 122 tggaagcaggaaagccttccttttgattttcagcatctggaaacagagacagtaacattg 181
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 tggaagcagtaaagccttccttctgattttcagcatctggaaacagagacagtaacattg 381
Query: 182 ttgctgacttgaaactctgacttagaaggtgtcgggtgctcatgactgtacttggtcctc 241
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 ttgctgacttgaaactctgacttag---gtgtcgggtgctcatgactgtacttggtcctc 438
Query: 242 agagctgctccatggagaagctgcgctcctcagatattcagctta 286
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agagctgctccatggagaagctgcgctcctcagatattcagctta 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space: 189560
Effective search space used: 189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
