BAC Information

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BAC

Clone NameMSMg01-122B06
Chromosome13 (Build37)
Map Location 108,975,696 - 109,105,905
singlet/doubletdoublet
Overlap geneErcc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524
Upstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l
Downstream geneDepdc1b, Pde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122B06.T7 (MSMg01no122_b06.b1)MSMg01-122B06.TJ (MSMg01no122_b06.g1)
ACCAG332031AG332032
length1,1631,288
length of high quality
(start - end)
657 (78 - 734)434 (122 - 555)
definitionCHROMAT_FILE: MSMg01no122_b06.b1 PHD_FILE: MSMg01no122_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:08 2005CHROMAT_FILE: MSMg01no122_b06.g1 PHD_FILE: MSMg01no122_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,105,514 - 109,105,905)(108,975,696 - 108,976,112)
sequence
NNNTTTACATGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATT
CGTCTTCTCTGCACTGACTTTACTACACATCTCCTGCCCGTGGGAATTGC
TGGTCCAACTTGCAACTGTTGAAAGAGACAAATGACTTCACTTTATACTA
TATGCCTTTAGCTCGGTGACAATGAATCTATGTCTGGACTCCTCCGTGAA
GACTGCTGAACAACTCCACCTTGATCGTAGAAGGTGATAGGCAATAGACA
TATTAGACAGTGATTAATTCAATAGCTAGTGATTAATTCAGACCCTCAAA
ACTGGTGAAAGTCCTGAGAATAAATAGGGCTGAGCATGGGACACTGGTAT
GAACACCCGTAAGATGCTGTCTTCCGAACATAATATGGCTGACCTGTCTG
TTCATTCATGAATTCACAGCAAGACCTACACACGATGGAGCCTGTCAATC
AATATTCTAGCATACCAGGGCAGGAAGGGCGTATGAGCCAGTAGTGAGGA
GATTATTGGAAATGAATGGCTGCTGAGAGATGCCATCTATTTTCTTCCAG
TAAAGAGCCTAACACCCATGCTCATGTTTGAAACCCTAATTAAACTCAGT
GAGTCACTGTCTTAATCAGGGTTTCTATTCCTGCACAAACATCATGACCA
AGAAGCAAGTTGGGGAGGAAAAGGTTTATTCAGCTTACACTTCCATACTG
CTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGAAAAC
AGGAGCTGATGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTCC
CCTGGCTTGCTCAGTCTGCTCTCTTATAGAACCCAGACTACAAGCCCAGA
GATGATCCCACCCACCATGGAACCCCTTGATCACTAATTGAAAGAATGCC
TTACAAAAGTATCTCATGAAGGCATTTTCCTCACCTGAAGCTCCTTTTCC
CGTGAAAACTCCCAGTTGTGTTCAAGTTGACACCAAAACTATCCCGTTAC
CGTCACCTTTTAGAAAATGAAACCTTTAATCCCCATACTAAAGCCCGGGA
AATTGCCTCCACTTCCAATTTTTTTAAAATAATGGTAGGTGAAAAACCAC
CTTCTGGTCATATAAAAGGGCTCTTCTTCTCGTTCTAATGCCCACATTTA
TTTTTCTATACTC
TTTTTTTATCATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTAAAGTACCAGAGATATAATATGACTG
ACCCCAAACTCCTTAGTTGATGTTAACAGTGCATGGTCATCTGAAGGGTC
AAAGAAAACAGTCCTTCTGAGACAACCACAATTCTAAATAAGACGCTCTG
ACTGTAAGTACAACTTTCTTCTAGGCAGAAGCTTCTAGGCAGAGAGGGCT
AAGACTCAGTTAAAATTACAGCAAGGGTGAGCTGGAGAGATGACTCAGCA
GTTAAAAGCATTTGCTACTCTGACAGAGAGGGGACCTGGGTTCATTTCCT
AGCACTTACATGTCAGTTCCTAAGCGTCCCTAACTCTGGTTTCAGGCAAT
CTGACGCCCTCTTCTGGTCTCTGAGGTATCATGTACATACATGGTTCACA
TACATGCATACAGGCAAGACATTCATACATGCACACACACACACACACAT
ATAATATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTATCATCTCCTTTCTATTATCTCTTCTCTCCTCCTTTCGTTCTCCCC
TTTCTCTCTTCTTCCTCCTCTCCTTTTCTTCTTTCTCTTTTTCTTTTTTT
TCTTTTCTCACTCCTTTTTATTTTCTTCCTTTTCCTTCTCTCCTCTTTTC
CCTTTCTTTTTATCTTCTTCCCTTTTCCTCTCTTTTTTTCTCTTTCTTCT
CTTTTCTTTTCTCCCTTATCTCTTCTCACTTTCATTCTCCTCTATTCTTT
TTCTTTCTCTCTCTTTTTTCTCATCTTACTTTATCCTTTCTTCTTTTCTT
TCTATCTCTCATCACCTCTCTCTATTTCCTTTTTCTCTTTCTTCCCTTCT
CTTATCTTAACATCTACTTATTTCCCTCCTTCTTTTCTTTTCTTCCTTTC
TCCTTCCACTCTTATTCTTCTCTTTTCTATCCTCTTTCTCTCCCTTCTTT
TTACCCTTTTATTCTTCCCTTCTTACTCATTTTCCTATATTATCCCCTAT
TCTTTTCTTTCCTTTTTTTCTCTCATATATCTTTCTCCTTTTTCTCTCTC
CTTCTACTCTCTTTCTCTCCTTTATATCTTCTTTCACTTCCTTTCCCTTT
CTCTCCTTCCTTCTTCATCATCTCTCCTTCTCTTTCTGTTTTTTGTCTCT
TCTACTCTCTCTCTCTCTCTCTTTATTCTTCTCTTCTCTCTTTAACCTTA
CTCCACTTTTAACTTCTCTTTTCTCTCTTCTCTCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_b06.b1 MSMg01no122_b06.b1 CHROMAT_FILE:
MSMg01no122_b06.b1 PHD_FILE: MSMg01no122_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:08 2005
         (657 letters)



>mm_chr13_109105514_109106570
          Length = 1057

 Score =  735 bits (380), Expect = 0.0
 Identities = 389/392 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctcctgcccgtgggaattgctggtccaacttgcaactgttgaaagagacaaatgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 catctcctgcccgtgggaattgctggtccaacttgcaactgttgaaagagacaaatgact 333

                                                                       
Query: 61  tcactttatactatatgcctttagctcggtgacaatgaatctatgtctggactcctccgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tcactttatactatatgcctttagctcggtgacaatgaatctatgtctggactcctccgt 273

                                                                       
Query: 121 gaagactgctgaacaactccaccttgatcgtagaaggtgataggcaatagacatattaga 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 272 gaagactgctgaacaactccaccttgatcatagaaggtgataggcaatagacatattaga 213

                                                                       
Query: 181 cagtgattaattcaatagctagtgattaattcagaccctcaaaactggtgaaagtcctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cagtgattaattcaatagctagtgattaattcagaccctcaaaactggtgaaagtcctga 153

                                                                       
Query: 241 gaataaatagggctgagcatgggacactggtatgaacacccgtaagatgctgtcttccga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gaataaatagggctgagcatgggacactggtatgaacacccgtaagatgctgtcttccga 93

                                                                       
Query: 301 acataatatggctgacctgtctgttcattcatgaattcacagcaagacctacacacgatg 360
           ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  acataatatggttgacctggctgttcattcatgaattcacagcaagacctacacacgatg 33

                                           
Query: 361 gagcctgtcaatcaatattctagcataccagg 392
           ||||||||||||||||||||||||||||||||
Sbjct: 32  gagcctgtcaatcaatattctagcataccagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no122_b06.g1 MSMg01no122_b06.g1 CHROMAT_FILE:
MSMg01no122_b06.g1 PHD_FILE: MSMg01no122_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:09 2005
         (434 letters)



>mm_chr13_108975496_108976329
          Length = 834

 Score =  768 bits (397), Expect = 0.0
 Identities = 414/423 (97%), Gaps = 6/423 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttaacagtgcatggtcatctgaagggtcaaagaaaacagtccttctgagacaaccacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttaacagtgcatggtcatctgaagggtcaaagaaaacagtccttctgagacaaccacaa 260

                                                                       
Query: 61  ttctaaataagacgctctgactgtaagtacaactttcttctaggcagaagcttctaggca 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctaaataagacgctctggctgtaagtacaactttcttctaggcagaagcttctaggca 320

                                                                       
Query: 121 gagagggctaagactcagttaaaattacagcaagggtgagctggagagatgactcagcag 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagagggctaagattcagttaaaattacagcaagggtgagctggagagatgactcagcag 380

                                                                       
Query: 181 ttaaaagcatttgctactctgacagagaggggacctgggttcatttcctagcacttacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaagcatttgctactctgacagagaggggacctgggttcatttcctagcacttacat 440

                                                                       
Query: 241 gtcagttcctaagcgtccctaactctggtttcaggcaatctgacgccctcttctggtctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcagttcctaagcgtccctaactctggtttcaggcaatctgacgccctcttctggtctc 500

                                                                       
Query: 301 tgaggtatcatgtacatacatggttcacatacatgcatacaggcaagacattcatacatg 360
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgaggtatcatgtacacacatggttcacatacatgcatacaggcaagacattcatacatg 560

                                                                       
Query: 361 cacacacacacacacacatataatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 420
           ||||||||||||      ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacacacaca------tataatattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 614

              
Query: 421 tgt 423
           |||
Sbjct: 615 tgt 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)