Query= MSMg01no122_b08.b1 MSMg01no122_b08.b1 CHROMAT_FILE:
MSMg01no122_b08.b1 PHD_FILE: MSMg01no122_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:09 2005
(686 letters)
>mm_chr13_41449990_41451074
Length = 1085
Score = 1278 bits (661), Expect = 0.0
Identities = 676/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Minus
Query: 1 gagcaaagaaactcaaggaaaagagaaagctaccgtcaaaggcttctggagaggaactta 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 880 gagcaaagaaactcaaggaaaagagaaagctacagtcaaaggcttctggagaggaactta 821
Query: 61 gaaaatatttttattttccaaagctgtcttaaaggagaagttatagcagacctttggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaaaatatttttattttccaaagctgtcttaaaggagaagttatagcagacctttggttt 761
Query: 121 agctgataatgaccatttatacccctttttggtttgatgtataagctttaattttttttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 760 agctgataatgaccatttatacccctttttggtttgatgtataagctttaa-tttttttt 702
Query: 181 tctaaattgcttgttgtgttcaatggaaacttaggtccccttccaaccccaccagctttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tctaaattgcttgttgtgttcaatggaaacttaggtccccttccaaccccaccagctttc 642
Query: 241 aaaatggtgtgtgctgcctataaatttaaaagcagacagaaggcgttttgaaaagcatag 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aaaatggtgtgtgctgcctgtaaatttaaaagcagacagaaggcgttttgaaaagcatag 582
Query: 301 cttcattatttatggttttatatttacctaggaaacccagtttaaagctaaaggacttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 cttcattatttatggttttatatttacctaggaaacccagtttaaagctaaaggacttta 522
Query: 361 catgtccagagatgaggctttgtcaaaattgcaggtgtcttgataataacatgcttagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 521 catgtccagagatgaggctttgtcaaaattgcaggtgtcttgataataacatgtttagca 462
Query: 421 cgctgtacaacacacgctgaagccctcagcaaccccttcttcttagaccacacattgtcc 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cgctgtacaacacaggctgaagccctcagcaaccccttcttcttagaccacacattgtcc 402
Query: 481 ctgtgcccggaaccttgcaagtgccttcccgtaccctcctccttaccccgagtctcagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctgtgcccggaaccttgcaagtgccttcccgtaccctcctccttaccccgagtctcagac 342
Query: 541 aaaataaaacaaagccagacaaaatcctgcctcgacacctttcaaagccttggtagattc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aaaataaaacaaagccagacaaaatcctgcctcgacacctttcaaagccttggtagattc 282
Query: 601 tgtctctcctttgtgtcggtacaccagggccgcatcttaccttttcaaatgagccctcct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgtctctcctttgtgtcggtacaccagggccgcatcttaccttttcaaatgagccctcct 222
Query: 661 atgagtctctaataacagatg 681
|||||||||||||||||||||
Sbjct: 221 atgagtctctaataacagatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1085
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1075
Effective search space: 726700
Effective search space used: 726700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_b08.g1 MSMg01no122_b08.g1 CHROMAT_FILE:
MSMg01no122_b08.g1 PHD_FILE: MSMg01no122_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:09 2005
(370 letters)
>mm_chr13_41307274_41308041
Length = 768
Score = 630 bits (326), Expect = 0.0
Identities = 359/372 (96%), Gaps = 6/372 (1%)
Strand = Plus / Plus
Query: 1 agggatctgaagaagagacaatgaaacccttt--catatttttcattcttgggggggggg 58
|||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||
Sbjct: 201 agggatctgaaggagagacaatgaaacc--ttcccatatttttcattctt--gggggggg 256
Query: 59 cggaggttcctgaatattaaatttaacatcaccttcatagggatataatgtttttaaaat 118
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgaaggttcctgaatattaaatttaacatcaccttcatagggatataatgtttttaaaat 316
Query: 119 gcatatgtctttagataatcaagagagttgaaaacatctctagttcatgcatacaggatg 178
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 317 gcatatgtctttagataatcaagagagttgaaaacatctctagttcgtgcatacaggatg 376
Query: 179 tcaccgctatgaagatggatatgcctcagcagcagcgaccagttgcccacttcctatctg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcaccgctatgaagatggatatgcctcagcagcagcgaccagttgcccacttcctatctg 436
Query: 239 gaagggctttgcgtgccctgtcttatctggctgacccttcactcggtgtgacattttaga 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaagggctttgcatgccctgtcttatctggctgacccttcactcggtgtgacattttaga 496
Query: 299 aaggaggatgctgaatttctcatggctaaacaacttgggagacatggagaccaaggaact 358
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaggagggtgctgaatttcacatggctaaacaacttgggagacatggagaccaaggaact 556
Query: 359 gaatccaagagt 370
||||||||||||
Sbjct: 557 gaatccaagagt 568
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 768
Length adjustment: 9
Effective length of query: 361
Effective length of database: 759
Effective search space: 273999
Effective search space used: 273999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
