Query= MSMg01no122_f02.b1 MSMg01no122_f02.b1 CHROMAT_FILE:
MSMg01no122_f02.b1 PHD_FILE: MSMg01no122_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:38 2005
(584 letters)
>mm_chr13_30050499_30051482
Length = 984
Score = 1050 bits (543), Expect = 0.0
Identities = 564/573 (98%), Gaps = 4/573 (0%)
Strand = Plus / Plus
Query: 15 ggaattcttcacgaccttctgaaggtttggctccattttatttaaggttttttccccctt 74
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattcttcacgaccttctgaaggtctggctccattttatttaaggttttttccccctt 274
Query: 75 aatgctaaaatttaacaaggaatagttaaaatgtcatgtcagtaaccagtaagtaagata 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatgctaaaatttaacaaggaatagttaaaatgtcatgtcagtaaccagtaagtaagata 334
Query: 135 ttttatgttgttcctcttgactctacatatgtcctagctacttttatgttaatttgacac 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttttatgttgttcctcttgactctacatatgtcctagctacttttatgttaatttgacac 394
Query: 195 aaactagagtcatcagaaaggtcaactgagaaaatgcccccataatatccagttataagg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaactagagtcatcagaaaggtcaactgagaaaatgcccccataatatccagttataagg 454
Query: 255 catttccttaattagtgatcgatgggggagggtccagccattgtgggtagtgacttctct 314
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 455 catttccttaattagtgatcgatggggaagggtccagccattgtgggtagtgacttctct 514
Query: 315 gagctggtggtcctgggttcaagctgagcaagccataatgagcaagcacacttccatggc 374
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gagctggtggtcctggattcaagctgagcaagccataatgagcaagcacacttccatggc 574
Query: 375 ttctgcatcatttcctgtctccaggaccttccctgtttgagtgcctgcccaggcttcctt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttctgcatcatttcctgtctccaggaccttccctgtttgagtgcctgcccaggcttcctt 634
Query: 435 tgatgatggactatg----acacagaagcagaagttgtttcactgcagcaatagtaactc 490
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgatgatggactatgtatgacacagaagcagaagttgtttcactgcagcaatagtaactc 694
Query: 491 taactaggacaatacttttgttttgtttccaaaagtgaatttaaatttgtatgtatgtat 550
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 taactaggacaacacatttgttttgtttccaaaagtgaatttaaatttgtatgtatgtat 754
Query: 551 gtatgtatgtatgtatgtatgtatgtatgtatg 583
|||||||||||||||||||||||||||||||||
Sbjct: 755 gtatgtatgtatgtatgtatgtatgtatgtatg 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no122_f02.g1 MSMg01no122_f02.g1 CHROMAT_FILE:
MSMg01no122_f02.g1 PHD_FILE: MSMg01no122_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:38 2005
(586 letters)
>mm_chr13_30123177_30124162
Length = 986
Score = 543 bits (281), Expect = e-158
Identities = 309/327 (94%), Gaps = 14/327 (4%)
Strand = Plus / Minus
Query: 260 aatgtgtctctttcaaccccgtgataatgactttggacttctggccttacacctcggaga 319
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 aatgcgtctctttcaaccccgtgataatgactttggacttctggccttacacctcggaga 927
Query: 320 atatcgattcctcaggtcttaagccatcaagtttggggtaattcgctgcagcagccacag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 atatcgattcctcaggtcttaagccatcaagtttggggtaattcgctgcagcagccacag 867
Query: 380 gaggcgaatgccagctcccaggccccaggccttggcatcttgcctcttgctgttatcttt 439
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 866 gaggcgaatgccagctcccaggccccaggtcttggcatcttgcctcttgctgttatcttt 807
Query: 440 attgcttttttttttttttttttttttttttttgctggctgggctggtgaatctctagat 499
|||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 806 attgcttttttttttttttt--------------ctggctgggctggtgaatctctaggt 761
Query: 500 atttcctggcctcttgcccttcttcttgttctgcccactcacgttattgcacacaggttt 559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 atttcctgtcctcttgcccttcttcttgttctgcccactcacgttattgcacacaggttt 701
Query: 560 cacaggcttaggtaggtgtttccctcc 586
|||||||||||||||||||||||||||
Sbjct: 700 cacaggcttaggtaggtgtttccctcc 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
