Query= MSMg01no123_d24.b1 MSMg01no123_d24.b1 CHROMAT_FILE:
MSMg01no123_d24.b1 PHD_FILE: MSMg01no123_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:43 2005
(632 letters)
>mm_chr13_102837922_102838953
Length = 1032
Score = 1009 bits (522), Expect = 0.0
Identities = 540/546 (98%)
Strand = Plus / Minus
Query: 87 cgccctgagatgtcttgctgcccccgtgtactcttctgctttccacagtctctaacggtc 146
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1032 cgccctgagatgtcttgctgcccccgtgtactctcctgctttccacagtctctaacggtc 973
Query: 147 tgtagaggaacatttgcatcacattgcctccccttctttttcttatcttttttttccttc 206
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 972 tgtagaggaacatttgcatcacatagcctccccttctttttcttatcttttttttccttc 913
Query: 207 tttcttttattttgtctgccattggttcccaggactgcagtgattccattcctccagccc 266
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 912 tttcttttattttgtctgccattgattcccaggactgcagtgattccattcctccagccc 853
Query: 267 caatctctcagcttcattctctagttgtaccttaggctcatagccaacagcaaactcaat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 caatctctcagcttcattctctagttgtaccttaggctcatagccaacagcaaactcaat 793
Query: 327 tacaaaaaaagaaaaaaagaagaagaaaaaaaaagaaagaaattcaatttaagcaagcac 386
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 792 tacaaaaaaagaaaaaaagaaaaagaaaaaaaaagaaagaaattcaatttaagcaagcac 733
Query: 387 atggttgtattcaagaccacaacacaagcagtctggtagatagctctggatgcaatataa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 atggttgtattcaagaccacaacacaagcagtctggtagatagctctggatgcaatataa 673
Query: 447 aaacgatttttaaatgttctttttatttctatccaaggatgactggacaagattcatcag 506
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 aaatgatttttaaatgttctttttatttctatccaaggatgactggacaagattcatcag 613
Query: 507 ggaacattctggggagggtcctctctttcttggcagagggaaagtattttagtcagggtt 566
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 612 ggaacattctggggagggtcctctctttcttggcagagggaaagtgttttagtcagggtt 553
Query: 567 ttatggctacaacgaaacaccatggctaaaacgcaagttgggaaggaaagggtttatttg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttatggctacaacgaaacaccatggctaaaacgcaagttgggaaggaaagggtttatttg 493
Query: 627 gcttac 632
||||||
Sbjct: 492 gcttac 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no123_d24.g1 MSMg01no123_d24.g1 CHROMAT_FILE:
MSMg01no123_d24.g1 PHD_FILE: MSMg01no123_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:32:43 2005
(376 letters)
>mm_chr13_102803693_102804468
Length = 776
Score = 646 bits (334), Expect = 0.0
Identities = 365/376 (97%), Gaps = 2/376 (0%)
Strand = Plus / Plus
Query: 1 agtatattctttgttcattccttgttattttagttacttgaaaccctgagataaatgtag 60
||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||
Sbjct: 203 agtatattctttgttcattaattgttattttagttacatgaaaccatgagataaatgtag 262
Query: 61 ttatttaattccgatatacattgtagagtgatgaaatcaggagatcatttctacctcctt 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttatttaattcagatatacattgtagagtgatgaaatcaggagatcatttctacctcctt 322
Query: 121 aaacatttaatcactcttttgattatctggttgtttatactaattgcatatatttattag 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaacatttaatcactc--ttgattatctggttgtttatactaattgcatatatttattag 380
Query: 181 aaacaattaaaattttcaatataataatggagaaatagatgctccttaagttaaagtaat 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aaacaattaaaattttcaatataataatggagaaatagatactccttaagttaaagtaat 440
Query: 241 cagaatgcacatcttattactgtgtgtttggagacttcaagcaccatcttctagtaagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaatgcacatcttattactgtgtgtttggagacttcaagcaccatcttctagtaagtc 500
Query: 301 ataaaatatggtaataattattatgaactaatggtgctatataacaccagatcctattct 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 ataaaatatggtaataattattatgagctaatggtgctatataacaccagatcctattct 560
Query: 361 atctgccttactgagc 376
|||| ||||||||||
Sbjct: 561 gtctgtcttactgagc 576
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
