Query= MSMg01no125_m24.b1 MSMg01no125_m24.b1 CHROMAT_FILE:
MSMg01no125_m24.b1 PHD_FILE: MSMg01no125_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:58 2005
(547 letters)
>mm_chr13_3837169_3838115
Length = 947
Score = 1019 bits (527), Expect = 0.0
Identities = 542/547 (99%)
Strand = Plus / Plus
Query: 1 caagaaagggcacagagcaggggagctgcgggctgtgttcaatgtccttgaccagaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagaaagggcacagagcaggggagctgcgggctgtgttcaatgtccttgaccagaatgg 260
Query: 61 tgatggctacatcactgtggatgagctcaaggaaagcttgtccaagttaggcgagtccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatggctacatcactgtggatgagctcaaggaaagcttgtccaagttaggcgagtccct 320
Query: 121 ttcccaggaggagctggaggacatgatccgtgtggctgacgtggaccaagatgggaaggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcccaggaggagctggaggacatgatccgtgtggctgacgtggaccaagatgggaaggt 380
Query: 181 gaaatatgaggagtttgtgcgcctccacattgaaaattgagactgctggtcacaagctcc 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 gaaatatgaggagtttgtgcgcctccacgttgaaaattgagactgctggtcacaagctcc 440
Query: 241 aactcgtcgtctatctgcctgtctctgacaggcacttgtgccttcttgcggagctctgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactcgtcgtctatctgcctgtctctgacaggcacttgtgccttcttgcggagctctgct 500
Query: 301 tttgtggtggtgtttaaaagaagagaagtctgtgtggtgtatggaaactacctcatgagt 360
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 tttgtggtggtgttaaaaagaagagaagtctgtgtggtgtatggaaactatctcatgagt 560
Query: 361 gaggaagactttattggctctggatgctgtgccatctggagctgatcactagtcccctct 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gaggaagactttattggctctggatgctgtgccatctggagctgctcactagtcccctct 620
Query: 421 ctgcctgctgagactctggtcagaggatggtttccttgggtgtgtctctcctctccctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcctgctgagactctggtcagaggatggtttccttgggtgtgtctctcctctccctct 680
Query: 481 tgctgtggaatgggcgcttcctacctcccagggctcttataaccctttaaataaaaagga 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tgctgtggaatgggcgcttcctacctcccagggctcttataactctttaaataaaaagga 740
Query: 541 tgcaaat 547
|||||||
Sbjct: 741 tgcaaat 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_m24.g1 MSMg01no125_m24.g1 CHROMAT_FILE:
MSMg01no125_m24.g1 PHD_FILE: MSMg01no125_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:58 2005
(637 letters)
>mm_chr13_3858983_3860019
Length = 1037
Score = 1013 bits (524), Expect = 0.0
Identities = 596/646 (92%), Gaps = 45/646 (6%)
Strand = Plus / Minus
Query: 1 aatcagaaaggcctccctctcaggaggcagaggcaggtggatttcctagttcgaagccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 aatcagaaaggcctccctctcaggaggcagaggcaggtggatttcctagttcgaagccag 909
Query: 61 cctggtctacaaagtgagttccaggacagccagagctatacagagaaaccctgtctcaaa 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 908 cctggtctacaaagtgagttccaggacagccagagctacacagagaaaccctgtctcaaa 849
Query: 121 aaacc--------aaaaaaaaaaaaaaaaaaaaaaagtaaagaaaagaaaaagggaggaa 172
||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 848 aaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa--aaaaaaaagaaaaagggaggaa 791
Query: 173 gggaaggaaggaaggaaggaaggaaggaaagaaagaaagaaagaaagaaagaaagaaaga 232
||||||||||||||||||||||||||| ||| ||| ||| ||||||||||
Sbjct: 790 gggaaggaaggaaggaaggaaggaagg---------aag---gaaggaaggaaagaaaga 743
Query: 233 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 292
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa--- 686
Query: 293 gagagagagagagagagagagagagagagaaaggcctccctccggaccaactgagtgcca 352
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 -------------------agagagagagaaaggcctccctccggaccaactgagtgcca 645
Query: 353 gggctctgcttggaaaggcttcggggaggagattcgagacagggactttgagtgggggat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 gggctctgcttggaaaggcttcggggaggagattcgagacagggactttgagtgggggat 585
Query: 413 tggctccccaggccgtcaagaatgggtgtagacccgaggggtagacactacgagtagaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tggctccccaggccgtcaagaatgggtgtagacccgaggggtagacactacgagtagaca 525
Query: 473 cgc-gttcgctggtagagtgcttgcctagcatgcacaaagccctgggctcatctcaaccc 531
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 cgcggttcgctgttagagtgcttgcctagcatgcacaaagccctgggctcatctcaaccc 465
Query: 532 tgcataaactaggtgtggtggagcacacccataatcctgtaatgaggattaaataatctc 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgcataaactaggtgtggtggagcacacccataatcctgtaatgaggattaaataatctc 405
Query: 592 ggggcaagccaacaaaaaccatttgttatttaagacatagctttca 637
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggggcaagccaacaaaaaccatttgttatttaagacatagctttca 359
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 30
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
