BAC Information

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BAC

Clone NameMSMg01-125N19
Chromosome13 (Build37)
Map Location 36,375,000 - 36,375,297
singlet/doubletsinglet
Overlap geneFars2
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125N19.T7 (MSMg01no125_n19.b1)MSMg01-125N19.TJ (MSMg01no125_n19.g1)
ACCAG334836AG334837
length722716
length of high quality
(start - end)
299 (74 - 372)487 (75 - 561)
definitionCHROMAT_FILE: MSMg01no125_n19.b1 PHD_FILE: MSMg01no125_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:02 2005CHROMAT_FILE: MSMg01no125_n19.g1 PHD_FILE: MSMg01no125_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:38:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATAATTTGCGGCGCTAAACGACTCCTATATTTCGTGACGGGGCGGAA
TTCAGAATAGGGTTTCAGCTACTTGTCCCACATGGAGTTTTAATTTCCTT
TCTTTTCCTCTTCCTTTTTCAGAACCTAGATTGAAAACAGGGCAAGTCAT
GAGGCAGGCTGGAGCCCTCGGAGCTCTCTGCAGCCTGACATATCCTTGGG
ATAAGTGTATATTAACAAGCAGGCATGACTAATAGGATTGGGGTTGGGGG
CTGGGCTGGCGTGTGGCAATCCTTCTGGAGCCTCTGGTCTGCTTGTCACT
GGGGCTTACTAGGCACCTTGGGATTTGTCTGCAGCATATGTGCTGCTGTT
AATGATTGAAAAATTACCACACCAATTAGTCACGGATCACTGAAGGCAGG
GCCCCAAATGTGATGGACAATGTGATTAAATCCATGTATGTGACAATTAA
CTCTCCTGCAGGTTTATCCATCCAGGGAACGTGCCCTAGGCGTGAGAGCA
CAGTGGGTTGAGACGATGGGGAAGCGTGGTGTTAGAAAGGAATAGGGGAG
GTGAACGCCACAGACGAGACTGATGCATCTGGCACTATTGGCTTTTAATC
TGATCCGGACATAATCACGATTTGATTAATCCTGGCTTTATTGCACCTTT
TCATTGCCCATTTATTTATTTCTGCCCCTATTTGATGCACGTGTGGACTG
ATTAAATTCTGCTTCTTCCCTG
AATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCGAATAACAGGGAGAACAAAGCCCCAATT
AGACATCTCTTGCAAGAAAGGGACCCCATGAAAACCTCCAAACAACTTAG
ACTTCTGCCAAGGCTATTGGTTTCTCTCTACAAACTGAGGGCAAGGTCCT
ACCACTGAAGAAGATAGCAACATAACTCACTGAACCTAGAGAAATTGAGC
CATTGCCTAACTAGAGTGTTGCTCACTCTTAATGAATAGTGTTCATGGTA
CTGGAAGGTACTCTGCAAATTATCAAAGGATAAAGGCAACACCAACCCAG
CTAGGAGACCTTTGCTCTACGATGATGAGCCTACATGATATGCTGGTGCA
GCAGTGGCACAAGAGCTGTTGGAGTAACCAACAACTCTCTGATTAGATTT
AAGGTCCACACCATGAGATGGAACCCATGCCTGACTATGCTTGAGTGGCT
AAGAACCTCAGATTAGATAGGTCATGGACATATGTGAATACTGCTATGCT
ACTAAAGAAATATAGCAATATAATGACTGCCAACAACATTCCATCATACC
TACTCATACATCAGTGTCTTTCCCAGCTAACAACACACAAGCTTTCACTG
GCAGTATAGGAGAACAATGCCGAGATCCCAATGGCATAATGTAAAAGATT
GGGAGAGCTTGGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_n19.b1 MSMg01no125_n19.b1 CHROMAT_FILE:
MSMg01no125_n19.b1 PHD_FILE: MSMg01no125_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:38:02 2005
         (299 letters)



>mm_chr13_36374800_36375498
          Length = 699

 Score =  553 bits (286), Expect = e-162
 Identities = 295/298 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcccacatggagttttaatttcctttcttttcctcttcctttttcagaacctagattg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 201 tgtcccacatggagttttaatttcctttcctttcctcttcctttttcagaatctagattg 260

                                                                       
Query: 61  aaaacagggcaagtcatgaggcaggctggagccctcggagctctctgcagcctgacatat 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacagggcaagtcataaggcaggctggagccctcggagctctctgcagcctgacatat 320

                                                                       
Query: 121 ccttgggataagtgtatattaacaagcaggcatgactaataggattggggttgggggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgggataagtgtatattaacaagcaggcatgactaataggattggggttgggggctg 380

                                                                       
Query: 181 ggctggcgtgtggcaatccttctggagcctctggtctgcttgtcactggggcttactagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctggcgtgtggcaatccttctggagcctctggtctgcttgtcactggggcttactagg 440

                                                                     
Query: 241 caccttgggatttgtctgcagcatatgtgctgctgttaatgattgaaaaattaccaca 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccttgggatttgtctgcagcatatgtgctgctgttaatgattgaaaaattaccaca 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)