Query= MSMg01no127_l22.b1 MSMg01no127_l22.b1 CHROMAT_FILE:
MSMg01no127_l22.b1 PHD_FILE: MSMg01no127_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(401 letters)
>mm_chr13_26981513_26982313
Length = 801
Score = 596 bits (308), Expect = e-174
Identities = 379/410 (92%), Gaps = 18/410 (4%)
Strand = Plus / Minus
Query: 1 ggagtaagtaggcctgacaaggaggctcatagaatctatttgagaaattcttgccaaatt 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 544 ggagtaagtaggcctgacaaggagtctcatagaatctatttgagaaattcttgctaaatt 485
Query: 61 cccaaactgtgttgatgttgtacctattcaggcaagatgatgcattaaatcagtaacact 120
| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 484 cacaaactgtgttgatgttgtacctattcagacaagataatgcattaaatcagtaacact 425
Query: 121 caacccaattttttcctttgattatgatataaaaattgaataatatttattcatgcaaca 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 424 caacccaattttttcctttgattatgatataaaaattgaattatatttattcatgcaaca 365
Query: 181 ttgctgagtgaatcttctaatgtacttgctgaaattctcacactttccctattcattaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 364 ttgctgagtgaatcttctaatgtacttgctgaaattctcacactttccctatttattaaa 305
Query: 241 aattacatatataatactgctaa-gcacatgaccatgaatatatggctgttattatcatt 299
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct: 304 aattacatatataatactgc-aatgtacatgaccatgaatatatggctgttattatcatt 246
Query: 300 gctgtaagttatattgcaataattaccccattctcaaaatttgac------c-acccccc 352
|||||| |||||||||||||| ||||||||||||| ||||||||| | ||
Sbjct: 245 gctgtaggttatattgcaatagttaccccattctctaaatttgactattttctac----- 191
Query: 353 atgaataattaattgcagcattactgtggcattcttctga--tctaaatg 400
| ||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct: 190 a--aataattaattgcagtattaatgtggcattcttctgaaatctaaatg 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no127_l22.g1 MSMg01no127_l22.g1 CHROMAT_FILE:
MSMg01no127_l22.g1 PHD_FILE: MSMg01no127_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:40:36 2005
(543 letters)
>mm_chr13_26839525_26840467
Length = 943
Score = 919 bits (475), Expect = 0.0
Identities = 526/543 (96%)
Strand = Plus / Plus
Query: 1 ttcctcccccccacataaacaaagtcatgttgtcttaggctagccaagtttcttcttatt 60
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ttcctcactcccacataaacaaagtcatgttgtcttaggctagccaagtttcttcttctt 260
Query: 61 tgttctcagcatgaaaataatttcttccaaattcattctcagatacaagatagttagact 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgttctcagcatgaaaataatttcttccaaattcattctcagatacaagatagtcagact 320
Query: 121 ctaatagaaaactttacactttagatttaggtaatgagttatcccagtcactaagtaaag 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaatggaaaactttacactttagatttaggtaatgagttatcccagtcactaagtaaag 380
Query: 181 ctgttttccaggaaaaaaaaatagctatgctacatgaaatactttctttatactgatagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttttccaggaaaaaaaaatagctatgctacatgaaatactttctttatactgatagg 440
Query: 241 aatattggaaattatactgttaggaatattgtgatacttaggcttaaaatatgttttatt 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatattgggaattatactgttaggaatattgtgatacttaggcttaaaatatgttttatt 500
Query: 301 tagtagtgatagaaagacctcttacaacctagttagaatacacaattccccatatgttcc 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tagtagtgatagaaagacctcttacaacctagttagaatacacaatttttcatatgttcc 560
Query: 361 tgtacttttagcatttataaatcttatgttattcttgcatgtttaaagaaatataacatg 420
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 561 catacttttagcatttatgaatcttattttattcttgcatgtttaaagaaatataacatg 620
Query: 421 ctttatttacacattttaaataatactgaaaagaaggcaagtggtataatgtgggagagt 480
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 621 ctttatttacacattttaaataatactgaaaacaaggcaagtgatataatgtgggagagt 680
Query: 481 gctttttcaaacttggcttaaatcattatcattacgtaaatttttaaacactcttggaac 540
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gctttttcaaacttggcttaagtcattatcattacttaaatttttaaacactcttggaac 740
Query: 541 aac 543
|||
Sbjct: 741 aac 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
