BAC Information

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BAC

Clone NameMSMg01-128G07
Chromosome13 (Build37)
Map Location 19,844,443 - 19,845,102
singlet/doubletsinglet
Overlap geneGpr141
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik
Downstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128G07.T7 (MSMg01no128_g07.b1)MSMg01-128G07.TJ (MSMg01no128_g07.g1)
ACCAG336675AG336676
length705703
length of high quality
(start - end)
663 (43 - 705)631 (71 - 701)
definitionCHROMAT_FILE: MSMg01no128_g07.b1 PHD_FILE: MSMg01no128_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:28 2005CHROMAT_FILE: MSMg01no128_g07.g1 PHD_FILE: MSMg01no128_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAGAGGTATTATATCCATCCATTCTTCAAACATTACCTGCAAAAGCA
AAAACACCAGTGCATCTGAACAAACTTCCAGACTGTTGATCACAGCTCCT
CCAGTGCACTGACAAAGTGGCTCTGAAGTTTATCTGTTTTTATGACATAT
ACTTTATCTGTTTTAAGAACAAAGATAACAGTCTCTGAATTTTTATAGTC
TCTATACCTAAAACACCAAGTCGTTTTCATCAGTCAGTTTGATACTGATA
ATAATGCAGAACTGCAGACTGAGTTTAGGAAGAGGTTCACAGTTCTAAGA
GCTCAGGGTCAGGCCACATCTGATTTGTCTTTTCTTTGGACAGAGTTGTA
GGGAGGACACAGAACACAGGGACTCTGAATGTGAAAATATCTCTTCTAAT
CTCCCACTCTTTTCACAAAAGCATCAGGATTTAGTCATGAGGATTCTACC
CCAAGGCTGATGAAGTCATACAAAATAGTCTAAGCATGGTTCTAGTCCTC
TAAATTCTTCCAAGTAAATAGAAGATGACCTAAGGATATTCATGCACAAC
TCCTTAAGAATGCTGACTAACTTGACCAAAGCACAGGGAAGAGAAGGCAA
CAGAGAGCTATATGAAGCTTCTTTTCTCATGGTGGNTTTAACATCATCCT
CTATG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAA
CACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGT
TTAGCGGTTCCTCAGAGAATTGGACATAGTACTACCGGAAGATCCAGCAA
TACCTCTTCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATTGCAGCCTTATTTATAATAGCCAGATGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATTTACACAATGGAATACTACTCAGCTATTAAAAAATGAATTTATGAA
ATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CCCAAACACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAGAAACTTAGAATACCCAAGATACAATTTGCAAAACACGTGAAA
CTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_g07.b1 MSMg01no128_g07.b1 CHROMAT_FILE:
MSMg01no128_g07.b1 PHD_FILE: MSMg01no128_g07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:28 2005
         (663 letters)



>mm_chr13_19844240_19845302
          Length = 1063

 Score = 1224 bits (633), Expect = 0.0
 Identities = 653/660 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcagaggtattatatccatccattcttcaaacattacctgcaaaagcaaaaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcagaggtattatatccatccattcttcaaacattacctgcaaaagcaaaaac 263

                                                                       
Query: 64  accagtgcatctgaacaaacttccagactgttgatcacagctcctccagtgcactgacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accagtgcatctgaacaaacttccagactgttgatcacagctcctccagtgcactgacaa 323

                                                                       
Query: 124 agtggctctgaagtttatctgtttttatgacatatactttatctgttttaagaacaaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 agtggctctgaagtttatctgtttttatgacatatactttatctgttttaagaacgaaga 383

                                                                       
Query: 184 taacagtctctgaatttttatagtctctatacctaaaacaccaagtcgttttcatcagtc 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taccagtctctgaatttttatagtctctatacctaaaacaccaagtcgttttcatcagtc 443

                                                                       
Query: 244 agtttgatactgataataatgcagaactgcagactgagtttaggaagaggttcacagttc 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgtgatactgataataatgcagaactgcagactgagtttaggaagaggttcacagttc 503

                                                                       
Query: 304 taagagctcagggtcaggccacatctgatttgtcttttctttggacagagttgtagggag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taagagctcagggtcaggccacatctgatttgtcttttctttggacagagttgtagggag 563

                                                                       
Query: 364 gacacagaacacagggactctgaatgtgaaaatatctcttctaatctcccactcttttca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 564 gacacagaacacagggactctgaatgtgaaaatatctcttctaatctcctactcttttca 623

                                                                       
Query: 424 caaaagcatcaggatttagtcatgaggattctaccccaaggctgatgaagtcatacaaaa 483
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaaagcatcaggatttagccatgaggattctaccccaaggctgatgaagtcatacaaaa 683

                                                                       
Query: 484 tagtctaagcatggttctagtcctctaaattcttccaagtaaatagaagatgacctaagg 543
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 tagtctaagcatggttctagtcctctaagttcttccaagtaaatagaagatgacctaagg 743

                                                                       
Query: 544 atattcatgcacaactccttaagaatgctgactaacttgaccaaagcacagggaagagaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atattcatgcacaactccttaagaatgctgactaacttgaccaaagcacagggaagagaa 803

                                                                       
Query: 604 ggcaacagagagctatatgaagcttcttttctcatggtggntttaacatcatcctctatg 663
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 804 ggcaacagagagctatatgaagcttcttttctcatggtggttttaacatcatcctctatg 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)