BAC Information

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BAC

Clone NameMSMg01-128H16
Chromosome13 (Build37)
Map Location 25,288,126 - 25,288,374
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
Downstream geneNrsn1, Tpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128H16.T7 (MSMg01no128_h16.b1)MSMg01-128H16.TJ (MSMg01no128_h16.g1)
ACCAG336737AG336738
length698684
length of high quality
(start - end)
398 (38 - 435)249 (52 - 300)
definitionCHROMAT_FILE: MSMg01no128_h16.b1 PHD_FILE: MSMg01no128_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:35 2005CHROMAT_FILE: MSMg01no128_h16.g1 PHD_FILE: MSMg01no128_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
ACCTACCCCACCATTCCCTAGATGCTTTAGAGGAATTCTTTCTTCAAGAC
GGTTAAGAGTTTACATAGAAAATGTTCCCCAAAGGTTCAAGTAATTGAAT
ACTTTGTCCCCAACTGGGGGTAGTATTTAAGAGGTTGAAAAATTTATGAG
GCACTAGAGCCTCCCAGGAGAAAGTGGTTCGCCCCAAGCAGGGCTTGAAG
TTTATAACCAAGGCTCCACTTCCTGTACCATCTCTGTTTGCTGACCCACC
CAGATATGAATGTGTAGTCTCACACTCCAGTTTGCCATGGTTTTCCTGCC
ATGATGCTCTGGACCTTCTCAATACACAAACCAAAATCAACACTCCTTCT
CCCTCACATCACTTCCTGCAAGCTGTTCTGTCACAGTGCTATTGAAAAAT
AACCAACAAGTATGTAGCTGCTAGTACTGTTGACCAAACAGTTTAGGTTC
CCTGCCCAGACATGAGTTGTATTACATTAAAACTTTCCTTAGTGTTTCAC
ATGAGCAGGGAATGATTATCACTTCTGAGAAAGAGATTTCTAAGCTAGTG
TTCCAGTTCCCAGAGCCTTTACTTTATCTCCGACCCCTGGGCGAAAGAGA
TGGAGGTTCTATTTTAGAGACCGAGGCCCAGATAGCCTACTTTTAACA
TGGAGGCCGCCTGTTTCAAAAATTGAGGTGACACTATAGAAGTTTCCCCA
AAATTCTGCCTTCTTCCATATCTGCAAATTAGGATAATAACAGTATTATT
CTTGAATCGTTGTTGAAGGTTAATGTGAATGCCATTATGCATATGAGATG
CATAGAACATGACACCAGGCGCCAGGAGAGAGCTTGATAAATGTGTGTCT
CTCTCCTCTTCATCAGCGTGCTCCCAAGGCAATTGTTACCCCTTTACCTC
ATTAAAGACTATGAACATCATCACTAGTCTGCCACAGTGGGTTTAGAAAT
GTTTTTTAGAAGGTCTCTGTTGAATGATTTCCAGGGGTCTCCACAGAGGA
GACTGTCATTTCTCTCATCGTTCCACAATCATGCCAGTATCTGGGACCCG
CCAAGAGGCTCTTTTTCTGGTTAGCAATTTGTGTTCGCTAATTTTGTATG
ACCTACTATTAGATGATTAGAGAGTCCTAAAGGAATCAATATATACGTGG
AGAGGGTGCCTAGCATTGAGTGATTTCCACCTGGAGGAGCCAGGTAGCTT
CCTGGAGCGTTTGTGCTAATTGTGGCAAAGATGCACTTATCCATGCACAG
ACATAAGGAACATTTTGTATACTGGTTGTACAGGCCAGTGCACTAAGGAT
TTTTTTGTGCGTGCGCTTCTTTCTCAGAGCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_h16.g1 MSMg01no128_h16.g1 CHROMAT_FILE:
MSMg01no128_h16.g1 PHD_FILE: MSMg01no128_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:35 2005
         (249 letters)



>mm_chr13_25287926_25288574
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctgccttcttccatatctgcaaattaggataataacagtattattcttgaatcgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctgccttcttccatatctgcaaattaggataataacagtattattcttgaatcgtt 260

                                                                       
Query: 61  gttgaaggttaatgtgaatgccattatgcatatgagatgcatagaacatgacaccaggcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgaaggttaatgtgaatgccattatgcatatgagatgcatagaacatgacaccaggcg 320

                                                                       
Query: 121 ccaggagagagcttgataaatgtgtgtctctctcctcttcatcagcgtgctcccaaggca 180
           |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| 
Sbjct: 321 ccaggagagagcttgataaatgtgcgtctctctcctcttcatcagcgcgctcccaaggcg 380

                                                                       
Query: 181 attgttacccctttacctcattaaagactatgaacatcatcactagtctgccacagtggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgttacccctttacctcattaaagactatgaacatcatcactagtctgccacagtggg 440

                    
Query: 241 tttagaaat 249
           |||||||||
Sbjct: 441 tttagaaat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)