BAC Information

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BAC

Clone NameMSMg01-128K19
Chromosome13 (Build37)
Map Location 109,425,171 - 109,425,624
singlet/doubletsinglet
Overlap genenone
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
Downstream genePde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128K19.T7 (MSMg01no128_k19.b1)MSMg01-128K19.TJ (MSMg01no128_k19.g1)
ACCAG336881AG336882
length719720
length of high quality
(start - end)
563 (68 - 630)454 (70 - 523)
definitionCHROMAT_FILE: MSMg01no128_k19.b1 PHD_FILE: MSMg01no128_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:51 2005CHROMAT_FILE: MSMg01no128_k19.g1 PHD_FILE: MSMg01no128_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTC
AGAGCTCTTATCCCAGATGGTAAGCTAGCTGGGCAAGACCTCACCTTGAA
ATCGCCATTTCTACCATTCCTGGGCCTAACCTTGCTCTGTCCCAGGCTGA
CTTAGAACTCAGGAGTCTGCCTGCCCTTGTAAGCATAAACAAAAAAATTT
AGATGGGTAGGAGTTTCTGTGATCACCACTCCCTAAATATCTTTATCTCC
TTCCTTAGTATCTTTCTGACAAGTTGGCTCATAGCACAAGCTGTCTGCTC
CTTTACATCTGTGAAGCTCTTTATATAATTAATATTGCATCCTTGTATTT
TACATAGTTGAGAAAATATATATTTTTGAACTCAAGGTTTTAGAGCTCTT
TTCCATAGCCTTAACCCCTGTCTTAAAGGTTCCAGCATTTACCATTTTGC
TAAAGACATAGACACACCCTTAACTCCTGGACTTGTGCTATTTCTAACTA
TCATGGAGTTATTAGCATTAACAGGGAGGACATTCCTCAAAGGAGGAACA
TGAAAATATTATACAAACAAGCCTTATAGCCACAGTAACCATCGATACTC
ATGGAAGTCCATGCCCTGCTGGCTCTGTTTCAGGGGCAGGAACCATATCA
TGTTGTCCCTTACACATGGCCAAGCAGGACTTGGCAATTTGTGTTTGGTG
TTCTATGTTGTGTTCTTGA
TGATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATCGTGTATTTCAGTATTTCAGCTTGGGAC
TGTTTCTTCAGCCTGAACCCCGAATGATGATATGGAAGAGAGCTACAGTT
AGCTCACAGTAGAAAAGTAGTCTCAAGACATTCTCTATAAGTCTTGTTAA
CTATTCAAAGCCCGGCTTGTTTATGAACGCAGTATCACATCCTAGGCCAA
CTGGCATGGGAATCAATACACAAAGAAGATGAAATGATGTAGTACTATAT
TAAAAATGCACACAGTTGTGGTCTGGATAGGTGGCTCAGTGGTTAAGAGC
TCAGCTGCCCTTGCAGAAGACCCATGATTGTTTCCCAAGGGCAACATCAG
AAATCTGACAACTGTCTATAACTCTAATTATAAGGAATTTAATGCCCTCC
TATGACCTGTGAGGACATGTATTCACAGGACTATACCTGCATGCATATAC
ATAATTAAAAGTTATTTTAAGAGAAAAAGATACAATGGTAACACCATAAT
AATAAGAAATTGCTGCCTAACCTTATTTTTTGTACTTATGTGTCCAGTAT
TCTGACAGCCATATCTCACTTAAATCATGTAGAATTAGAACCCATATGCA
TTTGATAACCACCTTACTACATATTCTTTCTCACTTTTCCAAATAGTTCA
TGAATTTGGTAGTTGTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_k19.g1 MSMg01no128_k19.g1 CHROMAT_FILE:
MSMg01no128_k19.g1 PHD_FILE: MSMg01no128_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:51 2005
         (454 letters)



>mm_chr13_109425074_109425927
          Length = 854

 Score =  862 bits (446), Expect = 0.0
 Identities = 452/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcgtgtatttcagtatttcagcttgggactgtttcttcagcctgaaccccgaatgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 551 aatcgtgtatttcagtatttcagcttgggactgtttcttcagcctgaacccagaatgatg 492

                                                                       
Query: 61  atatggaagagagctacagttagctcacagtagaaaagtagtctcaagacattctctata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 atatggaagagagctacagttagctcacagtagaaaagtagtctcaagacattctctata 432

                                                                       
Query: 121 agtcttgttaactattcaaagcccggcttgtttatgaacgcagtatcacatcctaggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agtcttgttaactattcaaagcccggcttgtttatgaacgcagtatcacatcctaggcca 372

                                                                       
Query: 181 actggcatgggaatcaatacacaaagaagatgaaatgatgtagtactatattaaaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 actggcatgggaatcaatacacaaagaagatgaaatgatgtagtactatattaaaaatgc 312

                                                                       
Query: 241 acacagttgtggtctggataggtggctcagtggttaagagctcagctgcccttgcagaag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acacagttgtgggctggataggtggctcagtggttaagagctcagctgcccttgcagaag 252

                                                                       
Query: 301 acccatgattgtttcccaagggcaacatcagaaatctgacaactgtctataactctaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acccatgattgtttcccaagggcaacatcagaaatctgacaactgtctataactctaatt 192

                                                                       
Query: 361 ataaggaatttaatgccctcctatgacctgtgaggacatgtattcacaggactatacctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ataaggaatttaatgccctcctatgacctgtgaggacatgtattcacaggactatacctg 132

                                             
Query: 421 catgcatatacataattaaaagttattttaagag 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 131 catgcatatacataattaaaagttattttaagag 98


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)