BAC Information

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BAC

Clone NameMSMg01-128K23
Chromosome13 (Build37)
Map Location 81,793,185 - 81,793,538
singlet/doubletsinglet
Overlap genenone
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3, LOC238756
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128K23.T7 (MSMg01no128_k23.b1)MSMg01-128K23.TJ (MSMg01no128_k23.g1)
ACCAG336889AG336890
length708712
length of high quality
(start - end)
249 (71 - 319)354 (128 - 481)
definitionCHROMAT_FILE: MSMg01no128_k23.b1 PHD_FILE: MSMg01no128_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005CHROMAT_FILE: MSMg01no128_k23.g1 PHD_FILE: MSMg01no128_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAAT
TCTTTGTTCATTCCCGAACCCATCTTTTAAGGGGGTTATTTGATTTTCTG
GAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATC
TGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAGG
TCCGATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTATT
CAGGAATTTTTTCCCTGTGTTCTTATCTTCGAGACTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCCAC
TTAGATTTGATCTTACCACAAGGAGAGAGGAATGGGTCGATTCGTATTCT
TCTACATGATAACAACCAGTTGTGCCAGCTCCATTTGTTGAAAATGCCGT
CTTTCCTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCATGTGACCA
CAGGCGTGTGGGTTCATTTCTGTGTCTTCAATTCTATTCCATTGGTCTAC
TTTGTCTGTCCCTATACCAGCACCTTGCTCTTTTTATAATATTTGCTCTG
TTTTAAAGCTTTATGTCTTGCATGCCGTTTCCTTTCCAGCTATTTTTTTT
CCTTGACN
CGATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCCGAATTCTTTCTAACCATCTTAGCTAAGCACTGGG
AAGAGTAGGTCCACAGTCAAGCACCCTATAGAATCTTGGAGAATTAATTT
ATGATTTACCTGTGTGAACATAGTTCTTATAAAGACCATTAGAAAAAAAA
AAGTATTTTAATAGGTGACCTACTTAATTATAAGCATATAACTTCCTATC
TATCTCTACTGCCTACCTTAAAATAGTATTTGCAAGACTAGTTTTTATCT
AATAAAATCTAGATAGCTCGAGACATTGGAGCGGGTTATTTTTGAGTCAT
ATTTAATCTCCCTAAATGACTTACAACCGTTTATAAGCATCTCTATATCC
CCCCGATATATTTGGCTCTTCTTTCATCTATATGTATAACAAAACTGTGA
TCACTATAATCACCATGTTTAAAACTATAGGGTGAGAGGCAAGTCTATCT
ACCATAACAGCATAACTTCTATAGCAAGCTGTTGGCTTATTTTCTACCAG
CAAAGGTCTCAATAAGAGAAGCGCTAATATTTTCTATATATAAATTACAA
CTGAAGGCTTTTTAAATTTCACTCCCTAATCCAATTTGAAATTAGTTTCA
TTCATTTCTTTAATGTATAATAGTATTTTCCAGATTTTGCTCCTATTAAG
GTATATAAAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_k23.g1 MSMg01no128_k23.g1 CHROMAT_FILE:
MSMg01no128_k23.g1 PHD_FILE: MSMg01no128_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:52 2005
         (354 letters)



>mm_chr13_81792985_81793738
          Length = 754

 Score =  654 bits (338), Expect = 0.0
 Identities = 350/354 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagaatcttggagaattaatttatgatttacctgtgtgaacatagttcttataaagacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagaatcttggagaattaatttatgatttacctgtgtgaacatagttcttataaagacc 260

                                                                       
Query: 61  attagaaaaaaaaaagtattttaataggtgacctacttaattataagcatataacttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagaaaaaaaaaagtattttaataggtgacctacttaattataagcatataacttcct 320

                                                                       
Query: 121 atctatctctactgcctaccttaaaatagtatttgcaagactagtttttatctaataaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctatctctactgcctaccttaaaatagtatttgcaagactagtttttatctaataaaa 380

                                                                       
Query: 181 tctagatagctcgagacattggagcgggttatttttgagtcatatttaatctccctaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagatagctcgagacattggagcgggttatttttgagtcatatttaatctccctaaat 440

                                                                       
Query: 241 gacttacaaccgtttataagcatctctatatccccccgatatatttggctcttctttcat 300
           |||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 gacttacaagtgtttataagcatctctatatccccacgatatatttggctcttctttcat 500

                                                                 
Query: 301 ctatatgtataacaaaactgtgatcactataatcaccatgtttaaaactatagg 354
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 ctatatgtataacaaaactgtgattactataatcaccatgtttaaaactatagg 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)