BAC Information

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BAC

Clone NameMSMg01-128L23
Chromosome13 (Build37)
Map Location 74,146,005 - 74,146,281
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909
Downstream gene2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490, Arts1, Cast, LOC622204, EG544954
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128L23.T7 (MSMg01no128_l23.b1)MSMg01-128L23.TJ (MSMg01no128_l23.g1)
ACCAG336937AG336938
length689686
length of high quality
(start - end)
339 (75 - 413)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no128_l23.b1 PHD_FILE: MSMg01no128_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:56 2005CHROMAT_FILE: MSMg01no128_l23.g1 PHD_FILE: MSMg01no128_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTATCCTTAACCCAATTTTGTAATAGGGTTATTTGCCT
CTCTGGAGTCTTAACTTCTTGAGCTCTTTGAAAATATTGGATATTAGCCC
TCTATAGAATATAGGGTTGGTAAAGATCTTTTCCCAATCTGTAGGTTGCT
ATTTTGTCCTGAGACAGTGTTCTTTGCCTTATAGAACCTTTTCAATTTTA
TGAAATCCCAATTGTCTATAGTTGATCTTAGAGCCTGGGCCATTGGTGTT
CTGTTCAGGAAATGGTTAATTCTTTTTTGGAGGGAAATCATACAGAATCT
TTTCTTACCTATGATGATGAACACTATTTTGAAAGTCAGCTATAAAAGTA
GTCTTAGGGGCTATAGACACGGCTCAGAGGTTAAGAGCACTGGTTGTTCT
TCCAGAGATCCCGAGTTCAATTCCCATCAAGTACATGGTGGCTCACAATC
ATCTATAATGGGATCTGATGTCATCGTATGATATGGGGATGTACAGAAGA
CACAGCACTCACCTATATAAATAAATAAATCTTTTTAAAAATAAAAAAAG
TAGTCTTAGAGATCCTCCCACCATGATTCCCCATGTTGTATGTTGGGAAA
AGACTCTCAGAGGCCAGCCTGACACCTAGGTAATGAGGT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCGGGAGAGCAAGAATTAGAAGTAACT
TTTTAGTCATTTTTGAGTAGCCCAAGAAAGCAGAGAGTCCGGGGGATCTG
AGGGTCAGAGACTACCATGGGGAGGGGTAATTTGCTCCAAGTGCTCAGGT
GGGCCCCATTTCTGAAGTTTCAAAACAAGGTTTCCTCAAGCATGAGTTAA
TTTGTCAGACACTCAGCAAATTCCCCAACACACACTCACACACACACACA
CACACACACACACACACACACACTCTCACACACACACACACACACTTACT
CAGTGGGTGACTTGTTTAGACTCTCACACAGAACCCGGAGGACTGAAGAG
TCTATTGAACCAAATCTCCCAGCCCCATTGCCTCCTTGCTAACCCCATAA
TCTTCTTCAGAGCCACCAGTGCGACCCTGACCTCACCACAGAGTCAGCGG
GGTGGAGATCCCGTGGCAAGCGTCTCTAGAAGGAAGGAAAATCAGCAGAG
ACTCTCAGGATCCTTTTCGTGCAGGTAACCCGAGTGGTCAGCATCTCACC
CAGCACATCTAGTTCTCCAGGTAGGTAGGGATCCAGCACGGGCTTGTGCG
AAGTGTATTCTGCGACTGCTCCATCACCCTCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_l23.g1 MSMg01no128_l23.g1 CHROMAT_FILE:
MSMg01no128_l23.g1 PHD_FILE: MSMg01no128_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:57 2005
         (293 letters)



>mm_chr13_74145805_74146497
          Length = 693

 Score =  482 bits (249), Expect = e-140
 Identities = 274/291 (94%), Gaps = 14/291 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcgggagagcaagaattagaagtaactttttagtcatttttgagtagcccaagaaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcgggagagcaagaattagaagtaactttttagtcatttttgagtagccgaagaaagcag 260

                                                                       
Query: 61  agagtccgggggatctgagggtcagagactaccatggggaggggtaatttgctccaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagtccgggggatctgagggtcagagactaccatggggaggggtaatttgctccaagtg 320

                                                                       
Query: 121 ctcaggtgggccccatttctgaagtttcaaaacaaggtttcctcaagcatgagttaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaggtgggccccatttctgaagtttcaaaacaaggtttcctcaagcatgagttaattt 380

                                                                       
Query: 181 gtcagacactcagcaaattccccaacacacactcacacacacacacacacacacacacac 240
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gtcagacactcagaaaattccccaacacacactcactcacacacacacacacacacacac 440

                                                              
Query: 241 acacacacactctcacacacacacacacacacttactcagtgggtgacttg 291
           ||||||||||              |||||||||||||||||||||||||||
Sbjct: 441 acacacacac--------------acacacacttactcagtgggtgacttg 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)