Query= MSMg01no129_h18.b1 MSMg01no129_h18.b1 CHROMAT_FILE:
MSMg01no129_h18.b1 PHD_FILE: MSMg01no129_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:54 2005
(317 letters)
>mm_chr13_98052826_98053542
Length = 717
Score = 489 bits (253), Expect = e-143
Identities = 268/273 (98%)
Strand = Plus / Plus
Query: 4 ggaattcaacttagatgcccaaaacaccttgtacttctttgcacttaacagctattgagc 63
||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattcaacttagaggcccaaagcaccttgtacttctttgcacttaacagttattgagc 263
Query: 64 acgtggctaggagctgacccgagtgcaaacggagagattttaatctttcaaatgagattg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acgtggctaggagctgacccgagtgcaaacggagagattttaatctttcaaatgagattg 323
Query: 124 cacctgcactctgaggaagctaaagggagtttacaggatgattagctcatggtctagttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacctgcactctgaggaagctaaagggagtttacaggatgattagctcatggtctagttg 383
Query: 184 ggacttcgggtccttgtgaggaagtccttggcctggtaagtcttaagcaccgtgtctctc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 ggacttcgggtccttgtgaggaagtccttggcctggtaagtcttaagcaccgactctctc 443
Query: 244 tctctctctctctctctctctctctctctctct 276
|||||||||||||||||||||||||||||||||
Sbjct: 444 tctctctctctctctctctctctctctctctct 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_h18.g1 MSMg01no129_h18.g1 CHROMAT_FILE:
MSMg01no129_h18.g1 PHD_FILE: MSMg01no129_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:54 2005
(289 letters)
>mm_chr13_98147503_98148190
Length = 688
Score = 489 bits (253), Expect = e-143
Identities = 280/291 (96%), Gaps = 5/291 (1%)
Strand = Plus / Minus
Query: 1 agagactgaggccaaacagccttaaagacatctctgaaagtatca--tttcttgcaccag 58
||||||||||||||||||||||||||||||||||||||||||||| | || |||||
Sbjct: 488 agagactgaggccaaacagccttaaagacatctctgaaagtatcaac---cctggaccag 432
Query: 59 cagtctggggaccaccaaatggagacgtctatcagtttcaccgtcttgtcacctccagat 118
||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 431 cagtctgaggaccaccaaacggagacgtctatcagtttcaccgtcttgacacctccagat 372
Query: 119 gaagacaagggtaggactctgaaatgactccatcattacccagatcactctctttaaggc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaagacaagggtaggactctgaaatgactccatcattacccagatcactctctttaaggc 312
Query: 179 agtgggactgaatttttagccaccaaggagactgagttctaagagtagggaagatggtcg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agtgggactgaatttttagccaccaaggagactgagttctaagagtagggaagatggtcg 252
Query: 239 actgttttgggggtctacttctattacataactattaagccaccaaaacta 289
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 251 actgttttgggggtctacttctattacataactattaagtcaccaaaacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space: 190120
Effective search space used: 190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
