BAC Information

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BAC

Clone NameMSMg01-130K15
Chromosome13 (Build37)
Map Location 52,053,252 - 52,053,431
singlet/doubletsinglet
Overlap genenone
Upstream geneSpin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3, Shc3, Cks2, Secisbp2, Sema4d, Gadd45g
Downstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130K15.T7 (MSMg01no130_k15.b1)MSMg01-130K15.TJ (MSMg01no130_k15.g1)
ACCAG338359AG338360
length707711
length of high quality
(start - end)
243 (74 - 316)189 (128 - 316)
definitionCHROMAT_FILE: MSMg01no130_k15.b1 PHD_FILE: MSMg01no130_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:34 2005CHROMAT_FILE: MSMg01no130_k15.g1 PHD_FILE: MSMg01no130_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTTGCGGCGCTAAACGACTCCTATAATCCGAGCTGCGCGGAAT
TCTATGTGTTTTCAAGACATGCATGTTATTATTATCATTAACTAACCAAA
AGGGCATAAAATAAATTAACACCTGTGCAGTTATTTATGCAGAGTCCTGG
TCTCAAACTCAGCATATAGTTATGGATAACCTCGAACCTCTGTTCCAGCT
GCCTTCAGCTCCGAAGTGCTGGAACTACGAGTGTGGGCCACCACAGCCCA
TTCTGTGCAGGGTTGAGGATGAAACCCAGGCAATATACACAACACCACAT
CCCTGGACTTCAAAAGCTTGGTGNTTGAAAACCTTGCATCCCATGCTTAT
AGTGACCTTGGTTGACTCTGCCTGGGCTACCCTAGATACATGTTAAACAT
GACATACACGTCCAGGAGAGGAACGTGTGTGTTGAGCCCAATACTCTGCC
TCTAGAAAGCACTGAATGAGTGGCGACGACTAAAAGGCTAATGGTATAAC
AAGGTCTATTCTCCCAGTCACAGAATTTATGCGTGAGTGGTCTGCAGGCT
GATTCTGGAGAGTCACCTGTTTTCATGGCAGACCTTTTTCTCCCTTCTTT
TACACTTATTACACTTATAAATCTCCTTCGGAGTAAAGTTGCCCATTGTA
CAAACTACCCCATATTTATTGCATTCCAGTGGTGTCCGACCCGCTTCTTC
GCCTTCG
CGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGATCCCCAGGACCTATGTGAAGCTAG
ACACAGCAGTACACATCTTTAACCCTCAGGCTCTTGTGATAAAATGGAGG
GGAGCAAGATAACCCAGAAGCCCACAGGCCATCTGGCTTGGTATACACAA
AGACAAATAGGTGGCGCCTCAGAGAAGCTAGAAAGTAAAGACCAAAGCTT
ACAGGGTGTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCT
CTCTCTCTCTCTCTCACACACACTTTTTTACTCACTCACACACTCACTCA
TCCAGGGGCGTTTACGTCNTCCCCCTGCAACCACCCAGGAACATACTCTA
AAACATTTCACATATTCCCTCACACAAAATCATCAAAAATACACGTGGGG
CGGGGTGGATTCTTCAAATTCAGCCAGTCATGGCTAACTATCAGTCATCA
TCCATTCCAAGCCTGACCACGATAGACTCTTACATCCAGAAGCCAGATCC
CTTCCCCACTACGCTCTGTCCTGGGCAGAGCTCCTATCAGAGTTCCCTGA
CCCCTGTGCCGCAGTTTATACCTTCACATTGGTCCACTTCCTGCCTTAAG
AGGGACAAAGGCATTCCAGGTCCTTTTCACCCTGTTTCCACCCCCACTTC
TTCCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_k15.g1 MSMg01no130_k15.g1 CHROMAT_FILE:
MSMg01no130_k15.g1 PHD_FILE: MSMg01no130_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:34 2005
         (189 letters)



>mm_chr13_52053098_52053686
          Length = 589

 Score =  310 bits (160), Expect = 5e-89
 Identities = 175/180 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggctcttgtgataaaatggaggggagcaagataacccagaagcccacaggccatctggc 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 334 aggctcatgtgataaaatggaggggagcaagataacccagaagcccacaggccagctggc 275

                                                                       
Query: 61  ttggtatacacaaagacaaataggtggcgcctcagagaagctagaaagtaaagaccaaag 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 274 ttggtatacacaaagacaaataggtggtgcctcagagaagctagaaagtaaagaccaaag 215

                                                                       
Query: 121 cttacagggtgtcttctctctctctctctctctctctctctctccctctctctctctctc 180
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 214 cttacagggtgtcttctctctctctctctctctccctctctctctctctctctctctctc 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)