BAC Information

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BAC

Clone NameMSMg01-131G04
Chromosome13 (Build37)
Map Location 81,015,035 - 81,015,199
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131G04.T7 (MSMg01no131_g04.b1)MSMg01-131G04.TJ (MSMg01no131_g04.g1)
ACCAG338902AG338903
length711769
length of high quality
(start - end)
234 (372 - 605)165 (86 - 250)
definitionCHROMAT_FILE: MSMg01no131_g04.b1 PHD_FILE: MSMg01no131_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:35 2005CHROMAT_FILE: MSMg01no131_g04.g1 PHD_FILE: MSMg01no131_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCAXXXXXXXXXXXXXXXXXXXXXXXXCAATTCGGTAGCGAGCCGCGG
AATTCAGTAAGTACTTAAGGAATTCAGAATTACCTCTAGTATTGTAAGGG
AGACAGTGAAAGAAATTAGGCCTTACAATTTCTCTGAATAGAGCTAGCAA
TCTCCGAGCTAGTCTACATAGTAAATACTTAGAACAACAGTCGAGTCACT
CCCATACACAGGAATTTACAATGGCCTAGGAGGAAGGTGGGTTGTGGTTT
TGTGAGGAACTGAAGTATTATTCATGAAAGGGTTAGTAGAACAGAATTCC
CCTGGTACATGTTTTTCAGTGATTTCAGAGTAATAGCATAATCAGGTATT
TACTAAGGGATCCCTGGTGGCGGGTTTAACAATAGACTAGTATTACATCA
GACCATTCACCTGGCTCCTGTGTTTAGCTGATCTTAGAGCTGTTCCTAAC
TCAGTTGTGAACACTGCCTGGCTCCCCCTAGCTTTTTATGTATGCATTTT
CTTTGTTTTATGTAAAGAACAATTACAGATGTACCTTGGCGGATGTATTC
GCCTCGCTTTCTTGTTTTTCTTTTGTATTATAAGACGGGTGCTCGCTTTG
AGACATTACATTCAGATACCACACTCCTTTGTGTCCCTGACTGCTTGTCA
CCATTTTTTCATCGACTCCTGCCAACCCTGTAACAGGAACCCTCAATTCT
CCCGCAGAATG
CAATGAAGTGGTAGGCCTGGCGGACGCCTGGTTTCAAAAGAGGGGTGAAC
TATAGAAGGATCCCAAGAAATCCCAATGTCCATAGATATCATTCTTGAGG
CATTTGATAGCTTCCTAAAATTTAAAACTCATTTGAACTTTGAAATGCCA
TTAATTAACAGGATTATTAAACTTAATAATCACAGGGATTTTCTCAGATC
ATGGAAGATAAGCATAATTCTAGCCCCTTTAAAGGCTTGTTTCTTCCACT
GGAATGATCTGTATTCTGCGTTCTCTCCTTCCTTTCTTAACGTAGAATGG
GAGTTAACTTATAAACTTTAAGTTGAAAGAAAATGGAGTACACCCCCAAT
GGACTCTGGAAAATGGATAGCTAATGGAGGGCTTGGAGCGCGGCGTTTGT
ATTGGGTTGAAAAAAGAGCTGTTGTAACAGAGCTCTCATTCCTTCTCCAA
TGTGAACTTTACTTATTAAATTATATTATCTTATTTATTTATTTAATTAT
TTATTTACTTATTCACTTACTCACTAACCTATATACTCACTTTTTCCACA
CACCATGCTTCTCCATTCCCAGTAAATTGTCCTCTTTCTTTTTTTTATTT
CTTATTTTTTCTAACAATATATCATTTATCTCCTTGTCTTATTTTTGACT
CTTCATTCAACACAATTAACATATCATTCTAATTAATCTCATATTTTAAA
ACAAACACGACTATATCTTTATTTTCTTTCCTTTTCCTATCCGCTTTTAT
TCTTTTTCTCTTGTACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_g04.g1 MSMg01no131_g04.g1 CHROMAT_FILE:
MSMg01no131_g04.g1 PHD_FILE: MSMg01no131_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:35 2005
         (165 letters)



>mm_chr13_81014835_81015399
          Length = 565

 Score =  304 bits (157), Expect = 2e-87
 Identities = 163/165 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatcattcttgaggcatttgatagcttcctaaaatttaaaactcatttgaactttgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atatcattcttgaggcatttgatagcttcctaaaatttaaaactcatttgaactttgaaa 306

                                                                       
Query: 61  tgccattaattaacaggattattaaacttaataatcacagggattttctcagatcatgga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgccattaattaataggattattaaacttaataatcacagggattttctcagatcatgga 246

                                                        
Query: 121 agataagcataattctagcccctttaaaggcttgtttcttccact 165
           ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 245 agataagcataattctagctcctttaaaggcttgtttcttccact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)