BAC Information

Click to search

BAC

Clone NameMSMg01-131K19
Chromosome13 (Build37)
Map Location 32,242,418 - 32,242,611
singlet/doubletsinglet
Overlap geneGmds
Upstream geneLOC100041266, G630018N14Rik, LOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131K19.T7 (MSMg01no131_k19.b1)MSMg01-131K19.TJ (MSMg01no131_k19.g1)
ACCAG339116AG339117
length705705
length of high quality
(start - end)
532 (124 - 655)194 (122 - 315)
definitionCHROMAT_FILE: MSMg01no131_k19.b1 PHD_FILE: MSMg01no131_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:58 2005CHROMAT_FILE: MSMg01no131_k19.g1 PHD_FILE: MSMg01no131_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAANAGGATCCGCG
GAATTCTTTGTTACTTCAGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGACCTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGATGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTCCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCC
CTGTAGTAAAGCTTTAGGTCAGGTATGGTGATTCCACCAGAGGTTCTTTT
ATCCT
AACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCCAAAGAAATCAGCTGTACAGTCTAAGCTAGAGGTAAG
AACATTTTTGTCATTTTCCCTCTATAATGGCCACTTACTTCTCATAAAAC
AACTGCCTCTTTATGATTTCAACTCTGTAAGGGAAAAGGCAGAGACAAAT
TTATGTGTCCTGGTACAGACAGAGACTGGAGCTACATCCTAAATCACCGG
CATTTTGACATATGAACGCTGGTTTAACAGTTTTAGTTTCTGTTGGCTTC
TTTTCCATCAGAAATCTATTTTTAAAAAAAAAACAAACAGCCTACATGCA
TGGTATGTCTCTGCTCTCGCTCTATCAGGACTATTTCACCTCATGATCTC
ATGCCAATCCAGCTTAAACCTGGACATTTGTCTTCTCCACTCCCAAGCAC
AATGTTCAGCAGCATGGAAAAATCAGGGAAACCCCACTCACTGGCCAGCA
CTTTTAGTTCAGGGTTTCAGAACTGGATCCCGAATATCACAGGGTACTTC
CTTGGGATACATTTAACCCCTCACAGCAGAACCTCACCTTCTGTTGGTTT
CTAGATACAACTCAAGACATCTTCTACTCTTAACACTTGCTAGCCTCACA
GAATGCATCTTCTATCATAGAGTTAGCCACTTGGCTATCACTGAACGTAT
ACGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_k19.g1 MSMg01no131_k19.g1 CHROMAT_FILE:
MSMg01no131_k19.g1 PHD_FILE: MSMg01no131_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:59 2005
         (194 letters)



>mm_chr13_32242218_32242811
          Length = 594

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctataatggccacttacttctcataaaacaactgcctctttatgatttcaactctgtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctataatggccacttacttctcataaaacaactgcctctttatgatttcaactctgtaag 260

                                                                       
Query: 61  ggaaaaggcagagacaaatttatgtgtcctggtacagacagagactggagctacatccta 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaaagcagagacaaatttatgtgtcctggtacagacagagactggagctacatccta 320

                                                                       
Query: 121 aatcaccggcattttgacatatgaacgctggtttaacagttttagtttctgttggcttct 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcaccggcattttgacatatgaatgctggtttaacagttttagtttctgttggcttct 380

                         
Query: 181 tttccatcagaaat 194
           ||||||||||||||
Sbjct: 381 tttccatcagaaat 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)