BAC Information

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BAC

Clone NameMSMg01-131M10
Chromosome13 (Build37)
Map Location 27,449,157 - 27,449,538
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2
Downstream genePrl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131M10.T7 (MSMg01no131_m10.b1)MSMg01-131M10.TJ (MSMg01no131_m10.g1)
ACCAG339190AG339191
length712742
length of high quality
(start - end)
386 (327 - 712)367 (74 - 440)
definitionCHROMAT_FILE: MSMg01no131_m10.b1 PHD_FILE: MSMg01no131_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:07 2005CHROMAT_FILE: MSMg01no131_m10.g1 PHD_FILE: MSMg01no131_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCATXXXXXXXXXXXXXXXXXXXXXXTCACTTTCGGAGTGGATCCG
CGGAATTCCTTTCTTTCTCAAAGATAATTTAAAAAAATGCAATCTTCATA
TGATGTGTGTACTAAAACCCTAGCAACTTTAAGATTGAGAAACTCTAGTG
ATATCTGACAGGAAACTGATGAAGCAATCAGTTGTCTGTCATTCTGCCTA
GTATGAAAGGATGACATTTCCACTATGCTTTTCTTCTTTAGTCATACCTT
AAGCGTGATGATTATCAGTGGTTTTATTTATTGATTCTATGTATTTTTAT
AGATTGTACAGCTTCTTGATATTTATTTATTTTATTGTACTATGATCTGT
TAAGTTATTGGATGATTATTACATAAAACTACAGTCAATCAAAATACAGA
CTTAGAGCCCAGTCCCAGAAAATACATCTGCAATACATTAGCATTGGAGG
TTGGTTCAGGGCTCATGGTAGAATTTGGGGTGGAAATTTTGTAAGAGCCA
TATAATGGGGATTATTCTTTGAAATTGCATCCTGAAGGAATGATAAATGC
TAACACCTATAAAGTCTTGCCAGTGTGACAACCCAATCATGAGCTAAACA
AAGATAGCAGTGCTAAAGCCTGGGGTTCTCACTGCCACACAGAGAAGAAT
AGACAACTGAGGGGCACTCACTTTTAAAGAAAATATTTGATATATCTAAA
GATTCATGAGCA
TCATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACTGAGGATTCTCAAATGGATTAGA
AGCACCTAAGGAAATTTTCAAAGTCCTTAGTGATCAAGAAAATACAAATC
AAATGACCCTGGGATTCCACATTACACCAATCAGAACTGCTAAGATCAAA
ACCTCAGGGGACAGCACATGTTGACAAGGATGGGGAGAAGAGGAACACTC
CTCCATAGCTGGTTGGATTGCAAACTTTTACAGCCACTCTGGAAATCAAC
CTGGAGATTTCTCAGAAAATTGGAAATAAAATTACCTGAAGACCCAGCAC
TACCACTCTTGGGAATATACCCAAAAGATACCCAACTGTGCCAAAGGGGT
ACGTGTTCCACTATGTTCATTGTGGCCCTGTTTGTGATAGCCAGAAGTCG
AAAACAATCCAGATGTTCCACAACAGAAGAATGTATACTGAACTATCTTT
CATTAACACAACGAATCAGTACTCTGCTATTATGAATGAGGACATACTGA
ATTTTACAGATTTTTGTTGTTGTTATTCATAGATATCTTTTATACCATGG
TAGCTATCTCCTAGGGAGAAAATATTGAGAATAGTTTCACCTTAAGTGGC
TATGGATATATATGCAAAACATATTTTCCCACACACCGTTACGCAATATA
TGTGCATAATTACTTTATATTAATTTACTTATTATTCCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_m10.b1 MSMg01no131_m10.b1 CHROMAT_FILE:
MSMg01no131_m10.b1 PHD_FILE: MSMg01no131_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:07 2005
         (386 letters)



>mm_chr13_27448956_27449741
          Length = 786

 Score =  716 bits (370), Expect = 0.0
 Identities = 379/382 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tattttattgtactatgatctgttaagttattggatgattattacataaaactacagtca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tattttattgtactatgatctgttaagttattggatgattattacataaaactacagtca 261

                                                                       
Query: 62  atcaaaatacagacttagagcccagtcccagaaaatacatctgcaatacattagcattgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcaaaatacagacttagagcccagtcccagaaaatacatctgcaatacattagcattgg 321

                                                                       
Query: 122 aggttggttcagggctcatggtagaatttggggtggaaattttgtaagagccatataatg 181
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggttggttcagggctcattgtagaatttggggtggaaattttgtaagagccatataatg 381

                                                                       
Query: 182 gggattattctttgaaattgcatcctgaaggaatgataaatgctaacacctataaagtct 241
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gggattattctttgaaattacatcctgaaggaatgataaatgctaacacctataaagtct 441

                                                                       
Query: 242 tgccagtgtgacaacccaatcatgagctaaacaaagatagcagtgctaaagcctggggtt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgccagtgtgacaacccaatcatgagctaaacaaagatagcagtgctaaagcctggggtt 501

                                                                       
Query: 302 ctcactgccacacagagaagaatagacaactgaggggcactcacttttaaagaaaatatt 361
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 502 ctcactgccacacagagaagaatagacaattgaggggcactcacttttaaagaaaatatt 561

                                 
Query: 362 tgatatatctaaagattcatga 383
           ||||||||||||||||||||||
Sbjct: 562 tgatatatctaaagattcatga 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)