BAC Information

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BAC

Clone NameMSMg01-131O14
Chromosome13 (Build37)
Map Location 55,633,495 - 55,634,050
singlet/doubletsinglet
Overlap geneDdx41
Upstream gene4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1, Rab24, Prelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3
Downstream geneBC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131O14.T7 (MSMg01no131_o14.b1)MSMg01-131O14.TJ (MSMg01no131_o14.g1)
ACCAG339290AG339291
length708767
length of high quality
(start - end)
634 (75 - 708)79 (183 - 261)
definitionCHROMAT_FILE: MSMg01no131_o14.b1 PHD_FILE: MSMg01no131_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:17 2005CHROMAT_FILE: MSMg01no131_o14.g1 PHD_FILE: MSMg01no131_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAGCCG
CGGAATTCACTTTGTACACTAAGCTGGCCTCGAACTCAGAAATCCGCCTG
CCTCTGCCTCCCGAGTGCTGGAACCAAAGGCGTGCACCACCATGCCCGAC
ATAGCTCAGTGGTTCTTAACCTTCCTAATGATGAGACCACAACAGCTCCT
TGCGAGGCGGTGACCCCAACCGTAAAGTTAATTTATAGCACCACTTCATA
ACTGTAATGTTGTTACTATTATGAATTGTAAACATCTGATATGAAGGCTC
TCTGATATGGGACCCCCCAAAGGTGTTGAGACCCTCAGGTTGAGAACCAC
TGCCTTTCTCAGGGCCAACGGCAGACTCTGCTCTTCAGTGCCACCATGCC
GAAGAAGATTCAAAACTCCGCCAAGAGTGCCTTGGTAAAGCCTGTCACCA
TCAATGTGGGTCGTGCTGGAGCAGCCAGCCTTGATGTCATCCAGGTAGGC
ACACACTCCTAATAGACAGAGTCTTACTAGTATAGGCTAAAGCTGCCTTG
CTCCCTTGAAGTTAACCAAAGAGTCCACCTGTGGCCTTTAGTCAAGGCCA
TCCTTAGGCTGTCTAGTCCTCACAGCAAGGGGCTTCTGGTCACCTAGCGC
AGACTGCGAGCCCAGCTCCAGTGTCGGCCATGACTGGTGAGCTGAACCTT
GGGGTCCC
NTTCGATGCAGTGTGTAGCCTGGCGACCGCCTGTTTCACACGGGGGGTGA
CCTATAGAATTTTCCGAGAAATTCTTCTGCCAGTCTGGACCTGGGTTTCC
TTGCCTTTGTGAGCAGCAAACCCCATGTGAGCCGGCCTTTGAGAGACGCT
GCCTTCATGGGTTCCAGCATTCACAGTGGACAGCTACACTTCCACTCATA
GCTTGCTCCACAAAGCCATTCCCTGATACACACACACACACACCCCTTTC
TCTCCGTGCCAGATAGAGTGGTCTCTGTACATACCATGAATGCACATGCT
CATCTGGGAGAAACATGTGTGTTTTTTGTATGTGTGTGTGACTGTGTATG
TTTGTGCGAGTGAGTGTGCCCCTCGAGGTATCCTGTATGTGTGTGATTAG
TTAGAGTAGTTATCTTTGACCGCCCAATGTTTCTTTGTCTGCTTGTAGAT
ATGACTCGCCCTTGACATTTGGTAGGATGCATATTAATTAGAATGTATTA
TTTACTTTATTACCCAACTTATCATATCTCTATCACCTCTCTCTTTATAT
ATCGTTCCCACAATATATCTATTATCTCATCTTTTTCTCCCTCATCTTTT
CCCACAGTATTATACTCAGACCTCTCTACAACATTTCCTCCAACTCTATT
TTCTACTATGAAAGAGCGATATAAATGTGTCCAGCCCTTCTCTCAGCATC
TTCGACTGATTCCCCATTATATTTTTACTCTCTCCCTCTTCTGTCAGTAT
TTATTTATTAAAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_o14.b1 MSMg01no131_o14.b1 CHROMAT_FILE:
MSMg01no131_o14.b1 PHD_FILE: MSMg01no131_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:17 2005
         (634 letters)



>mm_chr13_55633017_55634050
          Length = 1034

 Score = 1036 bits (536), Expect = 0.0
 Identities = 551/556 (99%)
 Strand = Plus / Minus

                                                                        
Query: 79   agctcagtggttcttaaccttcctaatgatgagaccacaacagctccttgcgaggcggtg 138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 agctcagtggttcttaaccttcctaatgatgagaccacaacagctccttgcgaggcggtg 975

                                                                        
Query: 139  accccaaccgtaaagttaatttatagcaccacttcataactgtaatgttgttactattat 198
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  accccaaccgtaaagttaatttatagcaccacttcataactgtaatgttgttactattat 915

                                                                        
Query: 199  gaattgtaaacatctgatatgaaggctctctgatatgggaccccccaaaggtgttgagac 258
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 914  gaattgtaaacatctgatatgaaggctctctgatatgggaccccccaaaggggttgagac 855

                                                                        
Query: 259  cctcaggttgagaaccactgcctttctcagggccaacggcagactctgctcttcagtgcc 318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  cctcaggttgagaaccactgcctttctcagggccaacggcagactctgctcttcagtgcc 795

                                                                        
Query: 319  accatgccgaagaagattcaaaactccgccaagagtgccttggtaaagcctgtcaccatc 378
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 794  accatgccgaagaagattcaaaactttgccaagagtgccttggtaaagcctgtcaccatc 735

                                                                        
Query: 379  aatgtgggtcgtgctggagcagccagccttgatgtcatccaggtaggcacacactcctaa 438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734  aatgtgggtcgtgctggagcagccagccttgatgtcatccaggtaggcacacactcctaa 675

                                                                        
Query: 439  tagacagagtcttactagtataggctaaagctgccttgctcccttgaagttaaccaaaga 498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  tagacagagtcttactagtataggctaaagctgccttgctcccttgaagttaaccaaaga 615

                                                                        
Query: 499  gtccacctgtggcctttagtcaaggccatccttaggctgtctagtcctcacagcaagggg 558
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  gtccacctgtggcctttagccaaggccatccttaggctgtctagtcctcacagcaagggg 555

                                                                        
Query: 559  cttctggtcacctagcgcagactgcgagcccagctccagtgtcggccatgactggtgagc 618
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554  cttctggtcacctagtgcagactgcgagcccagctccagtgtcggccatgactggtgagc 495

                            
Query: 619  tgaaccttggggtccc 634
            ||||||||||||||||
Sbjct: 494  tgaaccttggggtccc 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)