Query= MSMg01no132_a23.b1 MSMg01no132_a23.b1 CHROMAT_FILE:
MSMg01no132_a23.b1 PHD_FILE: MSMg01no132_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:28 2005
(236 letters)
>mm_chr13_117807338_117807974
Length = 637
Score = 383 bits (198), Expect = e-111
Identities = 234/262 (89%), Gaps = 26/262 (9%)
Strand = Plus / Minus
Query: 1 taattgcatatgactccaatga-gaaaaaggttgcctggccaagttacaacttctgtttt 59
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 318 taattgcatatgactccaatgaggaaaaaggttgcctggccaagttacaacttctgtttt 259
Query: 60 ctgcctcttacattcaagtttctttgggtgtgcgtgtgtggagtgtgtgcgtgtg----- 114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctgcctcttacattcaagtttctttgggtgtgcgtgtgtggagtgtgtgcgtgtgcatct 199
Query: 115 --------------------catagtgccattgtttaagataatactccagttatttggt 154
||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gcgtgtgcgtgtgacaaacacatagtgccattgtttaagataatactccagttatttggt 139
Query: 155 agactagaaatttgaactcttagtccaattaaaaaaaaatgcaatagtctggtcaccaaa 214
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 138 agactagaaatttgaactcttagtccaatttaaaaaaaatgcaagagtctggtcaccaaa 79
Query: 215 ccttcaagaaggtctaagccac 236
||||||||||||||||||||||
Sbjct: 78 ccttcaagaaggtctaagccac 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 637
Length adjustment: 9
Effective length of query: 227
Effective length of database: 628
Effective search space: 142556
Effective search space used: 142556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no132_a23.g1 MSMg01no132_a23.g1 CHROMAT_FILE:
MSMg01no132_a23.g1 PHD_FILE: MSMg01no132_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:28 2005
(647 letters)
>mm_chr13_117662176_117663222
Length = 1047
Score = 1023 bits (529), Expect = 0.0
Identities = 578/599 (96%), Gaps = 8/599 (1%)
Strand = Plus / Plus
Query: 57 tcaaggaacaacttctaaattctttatagcatttcagagttagctttaaaacatgggcta 116
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 257 tcaaggaacaacttctaaattctttatagcatttcagagttagctttaaaatatgggcta 316
Query: 117 atataatgctgtggaaaagattaaataattttattctataagatcatgcctgtggaacca 176
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 317 gtataatactgtggaaaagattaaataattttattctataagaccatgcctgtggaacca 376
Query: 177 ctctgaacctaaataaattaaataaataaataaata--------ggggctggcgagatgg 228
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 377 ctctgaacctaaataaattaaataaataaataaataaataaataggggctggcgagatgg 436
Query: 229 ctcagcgggtaaaagcactgactgatctcccgaaggtcctgagttcaaaccccatcaacc 288
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 ctcagtgggtaaaagcactgactgatctcccaaaggtcctgagttcaaaccccatcaacc 496
Query: 289 acatggtggctcacaaccacctgtaatctgacaccttcttatggtgcgtctgaagacaac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acatggtggctcacaaccacctgtaatctgacaccttcttatggtgcgtctgaagacaac 556
Query: 349 tacagtgtagttacgtataatatcaaataaatctttgggctggagaaagcagggctgagc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tacagtgtagttacgtataatatcaaataaatctttgggctggagaaagcagggctgagc 616
Query: 409 aagcagagttgaccagagcgagtgggccaaccagagcaagcagggctgaaaagagtgagc 468
|||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct: 617 aagcagagttgaccagagcgagtgggccgactagagcaagcagggctgaaaagagtaagc 676
Query: 469 agaggtcctaaaattcaatttccaacaaccacatgagggctcacaaccatctgtacagct 528
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 677 agaggtcctaaaattcaatttccaacaatcacatgaaggctcacaaccatctgtacagct 736
Query: 529 acactatactcgtgtatataaaataaataagtcttataaataaataaacaaagaaacaaa 588
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 acactgtactcgtgtatataaaataaataagtcttataaataaataaacaaagaaacaaa 796
Query: 589 caaataaataaatgtagctgcttttcctaactgtatagtgaagacactgaggtttccag 647
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 797 caaataaataaatgtagctgcttttcctagctgtatagtgaagacactgaggtttccag 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
