Query= MSMg01no132_b06.b1 MSMg01no132_b06.b1 CHROMAT_FILE:
MSMg01no132_b06.b1 PHD_FILE: MSMg01no132_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:29 2005
(580 letters)
>mm_chr13_97648303_97649282
Length = 980
Score = 998 bits (516), Expect = 0.0
Identities = 557/580 (96%), Gaps = 15/580 (2%)
Strand = Plus / Plus
Query: 1 aatgtccaggattgtgccttgggtgggttattaagatctaaccccacagatgacgctgag 60
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aatgtccaggattgtaccttgggtgggttattaagatctaaacccacagatgacgctgag 260
Query: 61 aaaattgcatcaccatcccaacctactgctcttactcctcacgcagaaaactcacacgca 120
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 aaaattgcatcatcatcccaacctgctgctcttactcctcacgcagaaaactcaca---- 316
Query: 121 gaaaactcacaagcagaagctacagtcaaaggctgtggatttgatagttctgcactaact 180
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 -----------agcagaagctacagtcaaaggctgtggatttgatagttctgcactaact 365
Query: 181 ggcactataaatatttcagaagataaaagcatattttccccaattggtgcctgtctagca 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 366 ggcactataaatatttcagaagataaaagcatattttccccaaatggtgcctgtctagca 425
Query: 241 gctgatcctcacagtcagaagctttcccgctgtaatccgaaaagaagaaacaagaagaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gctgatcctcacagtcagaagctttcccgctgtaatccgaaaagaagaaacaagaagaca 485
Query: 301 gcttcccagcaaccatctgcgggagctgcagagcctctgccgcaggccactgctgtctta 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 gcttcccagcaaccatctgcgggagctgcagagcctctgccgcaggcccctgctgtctta 545
Query: 361 gacacctacgctgtgcatcagacactgccatgtcttagagactccgctgctgctgcttca 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gacacctacactgtgcatcagacactgccatgtcttagagactccgctgctgctgcttca 605
Query: 421 cacacagatagcactcagagctctctttcctctgcgtctgcccatcaacatcctactaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cacacagatagcactcagagctctctttcctctgcgtctgcccatcaacatcctactaaa 665
Query: 481 acccttccacaccgcaacacaactcccagaaagaaagctgtgcagctgaaagacttgata 540
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 accgttccacaccgcaacacaactcccagaaagaaagctgtgcagctgaaagacttgata 725
Query: 541 ttacgtggaagaattaacccaggaaataacattctcgaat 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttacgtggaagaattaacccaggaaataacattctcgaat 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_b06.g1 MSMg01no132_b06.g1 CHROMAT_FILE:
MSMg01no132_b06.g1 PHD_FILE: MSMg01no132_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:29 2005
(505 letters)
>mm_chr13_97820759_97821659
Length = 901
Score = 942 bits (487), Expect = 0.0
Identities = 499/505 (98%), Gaps = 4/505 (0%)
Strand = Plus / Minus
Query: 1 tgtatttgtacttctgacccctaaccatctattctgcaccagggctggcactgtgtgccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tgtatttgtacttctgacccctaaccatctattctgcaccagggctggcactgtgtgccc 642
Query: 61 aagctgtgctatgcaaaggaagccaacaagtgcacatgcgaggtcctggaaccaagccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aagctgtgctatgcaaaggaagccaacaagtgcacatgcgaggtcctggaaccaagccta 582
Query: 121 aagagggctcattagtagcggatagcaccccagtgatgctctgcgccaagggatgagctc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aagagggctcattagtagcggatagcaccccagtgatgctctgcgccaagggatgagct- 523
Query: 181 agacagaatccagggaaaggagccaaagttggccggtcagtgtgccaagctgggagtcct 240
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 522 ---cagaatccagggaaaggagccaaagttggccggtcagtgtgccaaggtgggagtcct 466
Query: 241 tgcacgtggtgatcaggcaaagggaagacgcctgcagagagggagagattggctgacagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgcacgtggtgatcaggcaaagggaagacgcctgcagagagggagagattggctgacagt 406
Query: 301 ggaagttaggaagcagtgatgggcagagcagggcagagcagagtcctgtgggaagcaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggaagttaggaagcagtgatgggcagagcagggcagagcagagtcctgtgggaagcaaga 346
Query: 361 gaggggtctcacacacctgcctgcatcgctttgggagagagctggccctgatagagggga 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 345 gaggggtctcacacacctgcctgcattgctttgggagagagctggccctgatagagggga 286
Query: 421 gcttgtgggctggggatgtatacttagcagatagtcggtgctcaaaacatgactgaaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gcttgtgggctggggatgtatacttagcagatagtcggtgctcaaaacatgactgaaaga 226
Query: 481 tcttaatgaaaatatgtcccccact 505
|||||||||||||||||||||||||
Sbjct: 225 tcttaatgaaaatatgtcccccact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 901
Length adjustment: 10
Effective length of query: 495
Effective length of database: 891
Effective search space: 441045
Effective search space used: 441045
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
