BAC Information

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BAC

Clone NameMSMg01-132E10
Chromosome13 (Build37)
Map Location 24,653,815 - 24,654,467
singlet/doubletsinglet
Overlap genenone
Upstream geneHist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132E10.T7 (MSMg01no132_e10.b1)MSMg01-132E10.TJ (MSMg01no132_e10.g1)
ACCAG339563AG339564
length713810
length of high quality
(start - end)
656 (42 - 697)60 (75 - 134)
definitionCHROMAT_FILE: MSMg01no132_e10.b1 PHD_FILE: MSMg01no132_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:45 2005CHROMAT_FILE: MSMg01no132_e10.g1 PHD_FILE: MSMg01no132_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCCCTAAACGACTCCTATTTCGAGAAGACCGCGGAATTC
TAAGTAGTATCCGACTCCCTTCTCCTTGTTTGTTCATGACATGGTCTCAC
TGTGTAGCCCAGGTTGGCCTGAAACTCAGTAGGTGGCTCAGGCTAAGCTC
AAACTCACAGTGATCCTCCTGACTCAGACTCCCGAGTGCTGAAATTATAG
GCATGTGCCACCATGTAGAACATAGAAAAATGGCTTTCCATCTCGTGGAA
GAGGCACAACCAAGACCCCTGACCTGAAGATGAACAACCTGCCCATGAAA
TCAATGCCTCTGCTGATAACAAAAAGGGCTCCAAGCACCAAGGACCACTG
TGGCCATGAAGAAAATGAGACTCCTCCCACCCAGAATCATTCTTCATGAA
GAACACTGTATCCAGTCACATCTGCCCTGGATGGACCATTTCTGAAGAAG
AGCTCTGAGTCCAGGGCTCACCCATCTCCTACAGGAGCTATGTCTGTACT
GATGAACAGCAGGTGGCAATGTGTCTGTCTGGGCTCCAGGACTGGCCTCA
ACAGCATCACTAGGACACACAGAGAATCAAAAGGAACCCTGGTTGGTGGC
TTCCTCAGGGCACCAGGTTACCAGGGATCCCAGTGCTCTGTACAGAATGA
CCTCGGAGCTCTTGGGCTGGTTTTTCTTTCTATATCACAGATAGTCTATC
CATGTAAATAATT
NACCATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGAGCTGAGGGCGGGACGGGTG
AAGAATTGGTTCACAAAGAAATCTTCTGTTTCCACAAGGGACTGCATTTC
GGGGGGTTCGCGGGGGATCGGGAGGAGAAAATTTTTTTTTTTTNTNTCTT
TTTTGTTCTTAATTTCTATTTCTTTCCTTTCCCCTCCCTTCCCTCCCCTC
ACCTTCCCCACTTCTCCCCCTCTCCTTGTTCTTTCTCCCCCCTCTCCCTT
ATTCTTACTCCCCCCCCCCCCGCACTCCCCCCCCCCCTCTTTTCTTTCCT
CCCCCCCCCCCCTCTCCCCTCTTTTCCCCCCTTCTCTTCCCCCCCCCCCC
TTTTTCCTCCCCTCTTCCTCCCCCCCTTCCCCCCTCCCTCCTCCCCACCT
CCCCCCCCCCCCTTTTTCTCTCTTCCCTTCTTCCTCCCTCCCCCCCCCCC
TCCCCCTTCCCTCTTTACTCCCCCTCTTCCTCCTCTCCCACTCCCACTCC
CTACCCTCCTCTCCCTCCTTTCCCTTCCCCTCTCCCTCCTTCCCCCTCCC
CTTTCTTCTTTCACTCTTTCCCTCCCCTCTCTCTCCTTTCCTCTCCCCTC
TTTTCTCCCTCATTCCCCTCCCCTCCTCCCCCTCTCCCTCTCCTCTCTCC
CTTCCTCCCCCTTTCTCCCCCTCCTTCCTCCCCCCCCCTCCTCCTCCACC
CCCCCTGTCCCCTCACATCCTTTCTCCTGCACTCCCTCTTCTCCCCCTTT
CTCTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_e10.b1 MSMg01no132_e10.b1 CHROMAT_FILE:
MSMg01no132_e10.b1 PHD_FILE: MSMg01no132_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:45 2005
         (656 letters)



>mm_chr13_24653613_24654667
          Length = 1055

 Score = 1210 bits (626), Expect = 0.0
 Identities = 647/654 (98%), Gaps = 1/654 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctaagtagtatccgactcccttctccttgtttgttcatgacatggtctcactgt 62
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctaagtagtaactgactcccttctccttgtttgttcatgacatggtctcactgt 262

                                                                       
Query: 63  gtagcccaggttggcctgaaactcagtaggtggctcaggctaagctcaaactcacagtga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtagcccaggttggcctgaaactcagtaggtggctcaggctaagctcaaactcacagtga 322

                                                                       
Query: 123 tcctcctgactcagactcccgagtgctgaaattataggcatgtgccaccatgtagaacat 182
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcctcctgactcagcctcccgagtgctgaaattataggcatgtgccaccatgtagaacat 382

                                                                       
Query: 183 agaaaaatggctttccatctcgtggaagaggcacaaccaagacccctgacctgaagatga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agaaaaatggctttccatctcgtggaagaggcacaaccaagacccctgacctgaagatga 442

                                                                       
Query: 243 acaacctgcccatgaaatcaatgcctctgctgataacaaaaagggctccaagcaccaagg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acaacctgcccatgaaatcaatgcctctgctgataacaaaaagggctccaagcaccaagg 502

                                                                       
Query: 303 accactgtggccatgaagaaaatgagactcctcccacccagaatcattcttcatgaagaa 362
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 accactgtggccatgaggaaaatgagactcctcccacccagaatcattcttcatgaagaa 562

                                                                       
Query: 363 cactgtatccagtcacatctgccctggatggaccatttctgaagaagagctctgagtcca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 563 cactgtatccagtcacatctgccctggatggaccatttctgaagaagagctctgagttca 622

                                                                       
Query: 423 gggctcacccatctcctacaggagctatgtctgtactgatgaacagcaggtggcaatgtg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gggctcacccatctcctacaggagctatgtctgtactgatgaacagcaggtggcaatgtg 682

                                                                       
Query: 483 tctgtctgggctccaggactggcctcaacagcatcactaggacacacagagaatcaaaag 542
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 683 tctgtctgggctccaggactggcctcaacagcatcactgggacacacagagaatcaaa-g 741

                                                                       
Query: 543 gaaccctggttggtggcttcctcagggcaccaggttaccagggatcccagtgctctgtac 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaaccctggttggtggcttcctcagggcaccaggttaccagggatcccagtgctctgtac 801

                                                                 
Query: 603 agaatgacctcggagctcttgggctggtttttctttctatatcacagatagtct 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agaatgacctcggagctcttgggctggtttttctttctatatcacagatagtct 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space:   675070
Effective search space used:   675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)