Query= MSMg01no132_h04.b1 MSMg01no132_h04.b1 CHROMAT_FILE:
MSMg01no132_h04.b1 PHD_FILE: MSMg01no132_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:58 2005
(636 letters)
>mm_chr13_12690907_12691943
Length = 1037
Score = 325 bits (168), Expect = 7e-93
Identities = 262/310 (84%), Gaps = 30/310 (9%)
Strand = Plus / Minus
Query: 1 gtcactacatgtagcttccttcac-cacacaggcatctgctcaaaatttatggcaaatac 59
||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||
Sbjct: 306 gtcactacatgtagcttccttaacacacacaggcttctgctcaaaatttatggcaaatac 247
Query: 60 ccacataatcccataatccttcccttctgctgctacttcataagattttctttcttcctt 119
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 246 ccacataatcccataatccttcacttctgctgctacttcataagattttctttctttctt 187
Query: 120 ccttccttcctccctccctccctccctctcatttatttgctatttatttatttgtttgtt 179
|| ||||||||||||| ||||||||||||| ||| ||
Sbjct: 186 ---tc---------------------tctcatttatttgttatttatttatttatttatt 151
Query: 180 tgtttgtttgtttgtttgtttatttttggtttttcgagacagggtttctctgtatagccc 239
| ||| ||| ||| ||| ||||||||| |||||||||||||||||||||| |||||
Sbjct: 150 tatttatttatttattt----atttttggtctttcgagacagggtttctctgtgcagccc 95
Query: 240 tggctgtcctggaactcacttttatagaccaggatggcctcgaactcagaaatccacctg 299
|||||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||
Sbjct: 94 tggctgtcctggaactcactctg-tagaccaggctggcctcgaactcagaaatccgcctg 36
Query: 300 cctctgcctc 309
||||||||||
Sbjct: 35 cctctgcctc 26
Score = 83.9 bits (43), Expect = 4e-20
Identities = 48/51 (94%), Gaps = 3/51 (5%)
Strand = Plus / Plus
Query: 496 aaataaataaataaataaataaataaataaataaataaataa---ataaat 543
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 130 aaataaataaataaataaataaataaataaataaataaataacaaataaat 180
Score = 76.1 bits (39), Expect = 8e-18
Identities = 45/47 (95%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 493 aataaataaataaataaataaataaataaataaataaataaataaat 539
||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 135 aataaataaataaataaataaataaataaataaataac-aaataaat 180
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 6
Length of query: 636
Length of database: 1037
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1027
Effective search space: 642902
Effective search space used: 642902
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no132_h04.g1 MSMg01no132_h04.g1 CHROMAT_FILE:
MSMg01no132_h04.g1 PHD_FILE: MSMg01no132_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:58 2005
(506 letters)
>mm_chr13_12613916_12614820
Length = 905
Score = 729 bits (377), Expect = 0.0
Identities = 468/507 (92%), Gaps = 22/507 (4%)
Strand = Plus / Plus
Query: 1 atttctgaggtttggttgttagaaaccacatatacagttgggctgtcttgttagcgcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctgaggtttggttgttagaaaccacatatacagttgggctgtcttgttagcgcaag 260
Query: 61 ttctagaggtttgtttttcaaaaggaaattgtcagtacgtttcgttacttacatctttca 120
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 ttctagcggtttgtttttcaaaaggaaattgtcagtacgtttcgttacttatatctttca 320
Query: 121 ctagataggagatgattcagatatcgacagtgtctttcttcttatgtgtgtgcacatgga 180
|||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtagaagatgattcagatatctacagtgtctttcttcttatgtgtgtgcacatgga 380
Query: 181 tgagtgtgtgccatggaagcaaatgcagaggtcagaaggtcactctctcctgctgtaggt 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtgtgtgccatggaagcaaacgcagaggtcagaaggtcactctctcctgctgtaggt 440
Query: 241 catggggatcaaagtcaggccatcaggctgggaggctagtaccttcccttccctgctgaa 300
||||||||||| | || |||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 441 catggggatcacactcgggccatcaggctgg-aggctaggaccgtcccttccctgctgaa 499
Query: 301 cttagtctctctctctctctctctctctctctctctctctctccctctccctctccctct 360
||||||||||| ||||| ||||| ||||| ||||| | ||||||||||||||||||||||
Sbjct: 500 cttagtctctccctctccctctccctctccctctc-c-ctctccctctccctctccctct 557
Query: 361 ccctctccctctccctctccctctccctctccccctctccccctctccccctctcccctc 420
||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct: 558 ccctctccctctccctctccctctccctctccc--tctccc--tctccc--tctcccctc 611
Query: 421 tctcctcctttctccttc-accttacttctatcatcatcatcatcgtcgtcccctcctcc 479
|||||||||||||||||| || ||||| |||| |||| ||||||||||||
Sbjct: 612 tctcctcctttctccttcgac-ttact-----------catcgtcgttgtcccctcctcc 659
Query: 480 ttctttgagagtctcactctgtaaacc 506
|||||||||||||||||||||||||||
Sbjct: 660 ttctttgagagtctcactctgtaaacc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 905
Length adjustment: 10
Effective length of query: 496
Effective length of database: 895
Effective search space: 443920
Effective search space used: 443920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
