BAC Information

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BAC

Clone NameMSMg01-133A18
Chromosome13 (Build37)
Map Location 16,133,829 - 16,134,098
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670994, EG625121, Gli3, LOC665157, Inhba
Downstream geneLOC625181, LOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133A18.T7 (MSMg01no133_a18.b1)MSMg01-133A18.TJ (MSMg01no133_a18.g1)
ACCAG340127AG340128
length682708
length of high quality
(start - end)
238 (124 - 361)523 (72 - 594)
definitionCHROMAT_FILE: MSMg01no133_a18.b1 PHD_FILE: MSMg01no133_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:45 2005CHROMAT_FILE: MSMg01no133_a18.g1 PHD_FILE: MSMg01no133_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXCTAATGCGAGAAATCCGCGGAAT
TCCATATATTTACTAAAACTTGCATCCTTGGGATGAAGCCTACTTTTGAT
CATGATGAATGATCATTTTGCCGTGTTCTTGGATTTGGTTTTCAATAATT
TTATTGAGTATTTTTGCATCAATATTCATGAGAGAAATTGGTCTAAAGTT
CTATTTCTTTGCTGAATCTTTGTGTGGTTTAGGTATCAGTGTAATTGTAG
TTTCATAAAATGAATTGGGTAGTGTTCCTTGTCTTTCTACTTTACAGATT
AATTTGAGAAGTATTGGTATTAGGTCTTCTCTGAAGATCTGATAGAATTC
TGCACTATTTTTATCTGGCCCTGCACTTTTTATTTTAGTTCTGAGACTTT
TAATGACTGCTTCTACTTCTTTAGGGATTATGAGACTTTTTAGATGGCTT
ATTTGATCCTGATTTAACTTTGGTATCTGGTATCTGTTTAGAAAATCATC
CATTTCATCGAGATTTTTCAGTTTTGTTGAGTAAAGGCTTTTATAGTAGG
ATCTGGTAAGTTTTTAGTTTCTTCAGTTTCTGTTGTTATGTCTCCCTTTT
CATTTCTGATTTTGTTAATTAGGATACTGTCTCTGTGCCCTCTGGTTAGT
CTGGATAAGTGTTTATCTACCTTGTTGGGTTN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCATGTCACTTTCCTTATTTCATCTGTT
TGTGTTATCAATCAGGAGTTTATTTTCATTGATTTATTTAAACATACTTA
TAATAACTCTTTTCAATGCTTTAGGATTTTATCTAACTCAATTTAACTAG
ATGCTATTACTATATACTTAATTCTTTCAGGAATTGTCTTGTCTTGTTTT
TTGTGTGTTTCTTACAGTACTATTTTGGGATTTATAAATCTGATATTATT
TCTTTGCTTGGTCTATTTTTATTGAATACATTGTTAGAAATTCATACATG
ATCACTGCATCTATATCACTCTTGCCTCACCCTTTCACTCCTCCATTGCC
CCCCAAGTACCCTCAAGCTCATGTCTTTTTAGTTATTATTGTTACATGTG
TATATAAATATGTATATGTACATATACTTGAATCTATGCACACATGCGTG
TGATATATGTATGTATATATATATATATATAGTCTTCTGAGTACACTTAA
CTTTACATATATATGCATGTGTCCACCTTAGGTTGTCAATATATGTGATA
GTGGTATCAAGAAGAGACTGACACTTATTCTCTCAGCAAGCATTGACCAT
CTGCAGCTCATCATCTAGGGATCAGACCATATGAGATCTCCCCTACCCAC
ATTGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_a18.g1 MSMg01no133_a18.g1 CHROMAT_FILE:
MSMg01no133_a18.g1 PHD_FILE: MSMg01no133_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:45 2005
         (523 letters)



>mm_chr13_16133629_16134551
          Length = 923

 Score =  476 bits (246), Expect = e-138
 Identities = 264/270 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcatgtcactttccttatttcatctgtttgtgttatcaatcaggagtttattttcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ctcatgtcactttccttatttcatctgtttgtgttatcaatcaggagtttattttcattg 411

                                                                       
Query: 61  atttatttaaacatacttataataactcttttcaatgctttaggattttatctaactcaa 120
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 410 atttatttaaacatacttataataactcttttcaatgcttcaggatttcatctaactcaa 351

                                                                       
Query: 121 tttaactagatgctattactatatacttaattctttcaggaattgtcttgtcttgttttt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tttcactagatgctattactatatacttaattctttcaggaattgtcttgtcttgttttt 291

                                                                       
Query: 181 tgtgtgtttcttacagtactattttgggatttataaatctgatattatttctttgcttgg 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 290 tgtgtgtttcttacagtactattttgggatttatacatctgatattatttctttgcttgg 231

                                         
Query: 241 tctatttttattgaatacattgttagaaat 270
           ||||||||||||||||| ||| ||||||||
Sbjct: 230 tctatttttattgaatatatttttagaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)