Query= MSMg01no133_b04.b1 MSMg01no133_b04.b1 CHROMAT_FILE:
MSMg01no133_b04.b1 PHD_FILE: MSMg01no133_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
(234 letters)
>mm_chr13_111375238_111375870
Length = 633
Score = 358 bits (185), Expect = e-103
Identities = 214/233 (91%), Gaps = 18/233 (7%)
Strand = Plus / Minus
Query: 3 tataattcagtctcatgtgtgcccccttttaaaaagtaaacaaa-ttgttcttccttatc 61
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct: 353 tataattcagtctcatgtgtgcccccttttaaaaag-aaa-aaacttgttcttccttatc 296
Query: 62 taatctgcttcagtatgattactgggtggtaacagttccatcttagtaaaagaggatgct 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 295 taatctgcttcagtatgattaccgggtggtaacagttccatcttagtaaaagaggatgct 236
Query: 122 ggcagagttctatagcgtaaatgcaaaactgaaaccatatcacttgaagcttctatgttt 181
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 235 ggcagagttctatagcgtaaatgcaaaac---------------tgaagcttctatgttt 191
Query: 182 acgatataaatagaaataaaccttagcttcatgaattagggtgactggtagtc 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acgatataaatagaaataaaccttagcttcatgaattagggtgactggtagtc 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space: 140400
Effective search space used: 140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no133_b04.g1 MSMg01no133_b04.g1 CHROMAT_FILE:
MSMg01no133_b04.g1 PHD_FILE: MSMg01no133_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
(454 letters)
>mm_chr13_111219656_111220509
Length = 854
Score = 787 bits (407), Expect = 0.0
Identities = 440/451 (97%), Gaps = 2/451 (0%)
Strand = Plus / Plus
Query: 1 tctgcacctccccagcttctgcttagctctgttttctcatggtaatccctaggtccacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcacctccccagcttctgcttagctctgttttctcatggtaatccctaggtccacag 260
Query: 61 gacaagagaaagtcaaggtctacactagaactgagttagtctagtcacagcccgtcttga 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaagggaaagtcaaggtctacactagaactgagttagtctagtcacagcccgtcttga 320
Query: 121 aatgaggagccacgtggtaactctttaggctttggagtgcaggccatggtctctagtagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaggagccacgtggtaactctttaggctttggagtgcaggccatggtctctagtagc 380
Query: 181 tgctcacctgtgctgatatgtagtgggaaagccacccatgcataatcggtcaatgaacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctcacctgtgctgatatgtagtgggaaagccacccatgcataatcggtcaatgaacag 440
Query: 241 actcaaccttgtgtcgggaaaccttcaccgtacaaccacgcgtgcaggcatccacaaaga 300
|||||||||||||||||||||||||| || ||| |||| ||||||||||||||| |||
Sbjct: 441 actcaaccttgtgtcgggaaaccttc-cc-tacgtccacatgtgcaggcatccacataga 498
Query: 301 tttggtctaaggctccagcttataactactgtgtaaggcgcttataaaagtaggagctta 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 499 tttggtctaaggctccagcttataactactgtgtaaggcggttataaaagtaggagctta 558
Query: 361 gacaggagaactccatcggtgggctttcagggtttggcttgatgaacttgagagtgactg 420
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 559 gacaggagaactccatcggtgggctctcagggtttggcttgatgaacttgagggtgactg 618
Query: 421 ctgacctacacaaactacactacctatttgg 451
|||||||||||||||||||||||||||||||
Sbjct: 619 ctgacctacacaaactacactacctatttgg 649
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
