BAC Information

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BAC

Clone NameMSMg01-133E07
Chromosome13 (Build37)
Map Location 20,211,182 - 20,211,693
singlet/doubletsinglet
Overlap genenone
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133E07.T7 (MSMg01no133_e07.b1)MSMg01-133E07.TJ (MSMg01no133_e07.g1)
ACCAG340293AG340294
length696693
length of high quality
(start - end)		514 (66 - 579)564 (69 - 632)
definitionCHROMAT_FILE: MSMg01no133_e07.b1 PHD_FILE: MSMg01no133_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:02 2005CHROMAT_FILE: MSMg01no133_e07.g1 PHD_FILE: MSMg01no133_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
ACCCTCACTTTCAGTTCCAACTCTCTTGATGCCATTAACAAAAGACTCTA
GAGACTAAACTTCAACTTGACTTCTGGGGAACAAACCATCTTCAAACACA
GCATGCACTAAGTTGTGTTCTAGAACTTCCATACAAAATATCCTGAATAA
ATGCTGCCCCAAATCCCTGGACTTAAGCTCTGCATTGACAGGAGACCACA
CTGCCCCTGGGTTAGGCTCCTCGGTAGAGACCAGGGTAATTAGGGAACAG
GAGGAAGAAGATGGAACCTCTGAATCTATGCCTCCTGGGGATTTTAACTC
AGTGTTTTTGGTGGTAAGTTGAATTGGCTTTATCTGTTTTCTGTTTTAAA
ATGCAATTTTTTTGTTCCTTGTTGTCCTTTTAGGATTTCGGTAAATATGA
AATATGATGATGTTATAATGCTTTATAAATAGTAAAAGTATTAGGTAACT
GTCACTGCACAGTTGGTTTCTTTTTCCCATATGTCCAAATGCAGGGCAAG
CATCTTTGAGCATCTTTATCTAGAGCAGACAGCANCAGAGGAAGCACTTC
CTAGGTTCCAGACAGTCCGCTGCACCTTACGAACTTTCTATGCAGACCCC
AATCCTCTAGACCCCAATAGGCACGCTCTGCTTGCGTCTGTTTCGC

AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATAAGTAACAGAAACATGAGTATCCAAATTA
ATAAAATCAGAAATGAAAAGGGAGACACAAGAACAGAAATGGAGGAAATT
TTTAAAAAAATCAGATCCTACTATAAAAGCCTATACTCAACAAAACTGGA
AAATCTAGATGAAATGGATGGTTTTCTAGACTGATGCCACATACCAAAGT
TAAACTACCTAAACAGGCCCATATCACACAAAGAAATAGAAGAAGTCATT
AAAAACCTCCCAACCAAAAAAAGCTGAGGGCCAGATGGGTTTAGTGCAGA
ATTCTACCAGACCTTCAAAGAAGACCTAACACCAATTTTCCTCAAACTAT
TCCATAAAACAGAAACCGAAGGAACACTACTAAATTGTTTTATAAAGCCA
CAGTTACTCTGATACCTAAACCACACAAGGATCCAACCAAAAAAGAGAAC
TTCAGACCAATCTCACTTATGAATATCAAAGTAAAAATACTAAATAAAAT
TCTTGCAAACTAAACCCAAGAACACATCAAAACCATCATTCACCACGATC
AAGTAGGCTTCATCCCAGGGATGCAACGTTGTTTTAATATACGAAAATCC
ATTAACATAATACACTATATAAATAACCGTAAAGAAAAAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_e07.b1 MSMg01no133_e07.b1 CHROMAT_FILE:
MSMg01no133_e07.b1 PHD_FILE: MSMg01no133_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:02 2005
         (514 letters)



>mm_chr13_20210982_20211893
          Length = 912

 Score =  957 bits (495), Expect = 0.0
 Identities = 509/515 (98%), Gaps = 4/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaactctcttgatgccattaacaaaagactctagagactaaacttcaacttgacttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tccaactctcttgatgccattaacaaaagactctagagactaaacttcaacttgacttct 653

                                                                       
Query: 61  ggggaacaaaccatcttcaaacacagcatgcactaagttgtgttctagaacttccataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ggggaacaaaccatcttcaaacacagcatgcactaagttgtgttctagaacttccataca 593

                                                                       
Query: 121 aaatatcctgaataaatgctgccccaaatccctggacttaagctctgcattgacaggaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaatatcctgaataaatgctgccccaaatccctggacttaagctctgcattgacaggaga 533

                                                                       
Query: 181 ccacactgcccctgggttaggctcctcggtagagaccagggtaattagggaacaggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ccacactgcccctgggttaggctcctcggtagagaccagggtaattagggaacaggagga 473

                                                                       
Query: 241 agaagatggaacctctgaatctatgcctcctggggattttaactcagtgtttttggtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agaagatggaacctctgaatctatgcctcctggggattttaactcagtgtttttggtggt 413

                                                                       
Query: 301 aagttgaattggctttatctgttttctgttttaaaatgcaa-tttttttgttccttgttg 359
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 412 aagttgaattggctttatctgttttctgttttaaaatgcaattttttttgttccttgttg 353

                                                                       
Query: 360 tccttttaggatttcggtaaatatgaaatatgatgatgttataatgctttataaatagta 419
           ||||||||||||||| |||||||||||||   ||||||||||||| ||||||||||||||
Sbjct: 352 tccttttaggatttcagtaaatatgaaat---atgatgttataatactttataaatagta 296

                                                                       
Query: 420 aaagtattaggtaactgtcactgcacagttggtttctttttcccatatgtccaaatgcag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaagtattaggtaactgtcactgcacagttggtttctttttcccatatgtccaaatgcag 236

                                              
Query: 480 ggcaagcatctttgagcatctttatctagagcaga 514
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ggcaagcatctttgagcatctttatctagagcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space:   454608
Effective search space used:   454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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