BAC Information

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BAC

Clone NameMSMg01-133H11
Chromosome13 (Build37)
Map Location 85,799,982 - 85,800,623
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
Downstream geneLOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133H11.T7 (MSMg01no133_h11.b1)MSMg01-133H11.TJ (MSMg01no133_h11.g1)
ACCAG340438AG340439
length706704
length of high quality
(start - end)
641 (66 - 706)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no133_h11.b1 PHD_FILE: MSMg01no133_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:17 2005CHROMAT_FILE: MSMg01no133_h11.g1 PHD_FILE: MSMg01no133_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGAGCCGCGGAAT
TCTAATTGTGCATTGCATATGATCATCGACTTGATTAAAATATTTTAAAC
TGTAAACTTAAGCGACTAAAAGTGCTTATTTTATGTAGGCATATTGAACT
ATGACCTTTCTCTTATTAGAGAGGGATAGAAGGAAGCAGTTGGAGAACAC
TTTAACAGTTAGGATTCAAGAGAGATTTTGACGTAACAAGCCACAAATCT
GTGGCACACCACTGTCCTGGCTTTAATAAACAATTGCACTAATTGGATGA
GGGCAAATTCTTGGTCTGGAAAGCCAAAGAAAATGATTTTCCTTTAAATA
AACACTATTTTCTGTAACTCCAGTAAGTTCTTGAGCTGTCACTTAATCCA
TTTTAAAAATAAATTCTGGTAATGCTTCAGAGATTGAAGAAAGCATCATA
GATTTCTGTGGCAACTGTGCAAAGCAAAACAGAGGCAAATAAAAATGATG
CAATTTGCTAAGTCTCAATTTTGATAAGCAAAAGAAAAAAGATAGCAAGA
CATGTCATTTTATATAACCCAATTCAATCATTGTCAAACATATCTTGAAG
TCCTTGTCAGTTTTTATAACAAAAGACTGCTCTCCCAGTCAATATTTTCT
TTTTTCCAACATATCAAAAGTCTGACTTGCATCACTTTATAACATTTTGA
ACACTC
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGCCCCCATATCTAATTGTAATCTGG
ACATGGAATTTTATTCCCCCATCTTTTGTTTCACATTTGTATAAACTCTG
TTCACCATTTATTCTCTGACTTCTCAATAAAAACTAATCAGCCAATGGTT
GGGCAGACAAGAGAATAGGAAAGGACTTCTGCCAGCCAGGGGTGGAGGAA
GAAAGAGAGGAGAGAGAGGGATTCACAATGAGGAAGGGATCCCAGAGACA
CCATATGAGAATGCTTTTGAACCCAAGAGAGCCACACCAATGCTAAAATG
TATTTTTGGTATCTCCCCCCCCCCCTAGCCAAAGTAGTTCAGAGGCATAG
AAGAGATAAATGACTGTCAAGAAAATGTGTTGTAAGCTATTTAATATGTA
ATATAGTCTTAGATTCATTCAGAAGTTAATTGGTGATAAATCTAGCCACT
TAAAAATATATATTTATATTTGCTTACCAATGTAGGAGTACTCTGTTCTT
TGAAATATCTTCCTGCATAGTCCAGAACATGAACAGGATTACATTTATTG
ATTTTCATATATTAAATGATCCTGCATCTCTGGGATGAAACCTTTCTGTT
CACAGTTTTTGATCTTTTAGGCGTATTTTCTATGTCTGTTAGCTCAGGAA
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_h11.b1 MSMg01no133_h11.b1 CHROMAT_FILE:
MSMg01no133_h11.b1 PHD_FILE: MSMg01no133_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:17 2005
         (641 letters)



>mm_chr13_85799782_85800823
          Length = 1042

 Score = 1127 bits (583), Expect = 0.0
 Identities = 628/643 (97%), Gaps = 3/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatgatcatcgacttgattaaaatattttaaactgtaaacttaagcgactaaaagtgc 60
           ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 catatgatcattgacttgattaaaatattttaaactgtaaacttaagtgactaaaagtgc 260

                                                                       
Query: 61  ttattttatgtaggcatattgaactatgacctttctcttattagagagggatagaaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattttatgtaggcatattgaactatgacctttctcttattagagagggatagaaggaa 320

                                                                       
Query: 121 gcagttggagaacactttaacagttaggattcaagagagattttgacgtaacaagccaca 180
           ||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||||||
Sbjct: 321 gcagttggagaacacttcaacagttaggattcaagatagattttgtcataacaagccaca 380

                                                                       
Query: 181 aatctgtggcacaccactgtcctggctttaataaacaattgcactaattggatgagggca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 aatctgtggcacaccactgtcctggctttaataaacaattgcactaattggatgggggca 440

                                                                       
Query: 241 aattcttggtctggaaagccaaagaaaatgattttcctttaaataaacactattttctgt 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcttgggctggaaagccaaagaaaatgattttcctttaaataaacactattttctgt 500

                                                                       
Query: 301 aactccagtaagttcttgagctgtcacttaatccattttaaaaataaattctggtaatgc 360
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 aactccagtaagttcttaagctgtcacttaatccatttttaaaataaattctggtaatgc 560

                                                                       
Query: 361 ttcagagattgaagaaagcatcatagatttctgtggcaactgtgcaaagcaaa-acagag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 561 ttcagagattgaagaaagcatcatagatttctgtggcaactgtgcaaagcaaaga-agag 619

                                                                       
Query: 420 gcaaataaaaatgatgcaatttgctaagtctcaattttgataagcaaaagaaaaaa-gat 478
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 620 gcaaataaaaatgatacaatttgctaagtctcaattttgataagcaaaagaaaaaaagat 679

                                                                       
Query: 479 agcaagacatgtcattttatataacccaattcaatcattgtcaaacatatcttgaagtcc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agcaagacatgtcattttatataacccaattcaatcattgtcaaacatatcttgaagtcc 739

                                                                       
Query: 539 ttgtcagtttttataacaaaagactgctctcccagtcaatattttcttttttccaacata 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttgtcagtttttataacaaaagactgctctcccagtcaatattttcttttttccaacata 799

                                                      
Query: 599 tcaaaagtctgacttgcatcactttataacattttgaacactc 641
           |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 800 tcaaaagtctgacttgcatcactttataacgttttgaacactc 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space:   651192
Effective search space used:   651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)