BAC Information

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BAC

Clone NameMSMg01-133H15
Chromosome13 (Build37)
Map Location 20,576,945 - 20,577,136
singlet/doubletsinglet
Overlap geneElmo1
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133H15.T7 (MSMg01no133_h15.b1)MSMg01-133H15.TJ (MSMg01no133_h15.g1)
ACCAG340445AG340446
length703701
length of high quality
(start - end)
493 (43 - 535)195 (119 - 313)
definitionCHROMAT_FILE: MSMg01no133_h15.b1 PHD_FILE: MSMg01no133_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:18 2005CHROMAT_FILE: MSMg01no133_h15.g1 PHD_FILE: MSMg01no133_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATAATTTGCGGCCGCTAAACGTTCACTTTTCGGAGCGGGCCGCGGAATT
CTTTGTTTCCCTCAGAGCCCCATTTTTTAGTGGGGTTATTTGATTTTCTG
AAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATC
TGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTG
TCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGG
TCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTT
CAGGAATTTTTCCCCTGTGCCCATATTTTCAAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGATCCAT
TTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCAATTCGCATTCT
TCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGT
CTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATTAAGTGACCA
TAGGTGCGTGGTTTCATTTCTGGGTCTTCAGAAACACGGGAGATAGAATC
CCTATGAAAGAAATCTGGAACCATACACTTGAGCATCCGCCCCATAATAC
CACTATTGTAATATAGTATCTCACGCGCTTATTATCCCCTTTACAACATC
GGN
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCACGAAATTCTTGGAATATATTTTTTCTAAATAATTATACAA
AACAGCACTTTTTCCATGTCAACACAAAAGGAGAGTAAAGAAGTTTTAGA
AGTGGGCCTTTCACTCGTGAAATGTGAAATGAATTAGAGAAATGTCTGTG
TTTAAAGCAGTGATTATCACCCTTTGCTGCATACAGCAGTCACCTTGAGA
AGAGCTAACAAATGGAAAAACAAAAATTGGAAGAGTAATATGGACATTAT
AAAGCCCAAATGCTTTAAGAGCAAAACAGTCATTTTATAGATTTTAAAGT
TTTTTCTTTTCCCCCCCCCCGCACTCTTTGCTTATAATACAGCTTCATCA
ACTTTGAAAATGAAAATATAAAGAGACAAAACACAGTACGGCTGTGACGA
CTAATTAATGATTGCAGTATCATGCTATGATTATATAGATTTTTGTGGTT
AATAAGTATCAATAAATATGTGTTAATAGTATGACTCAGTAGTCACACTG
CTTTTTAAAAAATTTTGTAACTTACTTAACTAAGGTTAACTTTTTGTCGA
GTCAAAGAAGAAAACCACACAGTTACTACAATGCCGTTGAAATATGTTGA
CTGTGAAAATCTCCTATGCTGAACCTTACCATATGCACTCAATGCTGCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_h15.g1 MSMg01no133_h15.g1 CHROMAT_FILE:
MSMg01no133_h15.g1 PHD_FILE: MSMg01no133_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:18 2005
         (195 letters)



>mm_chr13_20576742_20577336
          Length = 595

 Score =  348 bits (180), Expect = e-100
 Identities = 189/192 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   acacaaaaggagagtaaagaagttttagaagtgggcctttcactcgtgaaatgtgaaatg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 acacaaaaggagagtaaagaagttttagaagtgggcctttcactcgtgaaatgtgaaatg 263

                                                                       
Query: 64  aattagagaaatgtctgtgtttaaagcagtgattatcaccctttgctgcatacagcagtc 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct: 264 aattagagaaatgtctgtatttaaagcagtgattatcaccctttgctgcatacagtaatc 323

                                                                       
Query: 124 accttgagaagagctaacaaatggaaaaacaaaaattggaagagtaatatggacattata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accttgagaagagctaacaaatggaaaaacaaaaattggaagagtaatatggacattata 383

                       
Query: 184 aagcccaaatgc 195
           ||||||||||||
Sbjct: 384 aagcccaaatgc 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)