Query= MSMg01no133_j11.b1 MSMg01no133_j11.b1 CHROMAT_FILE:
MSMg01no133_j11.b1 PHD_FILE: MSMg01no133_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:26 2005
(664 letters)
>mm_chr13_10274453_10275516
Length = 1064
Score = 1104 bits (571), Expect = 0.0
Identities = 637/659 (96%), Gaps = 2/659 (0%)
Strand = Plus / Plus
Query: 7 gaattctctctgtcccccaggtaagattgaactatgaaattatctctgattagacatatg 66
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 207 gaattctctctgtagcccaggtaagattgaactatgaaattatctctgattaggcatatg 266
Query: 67 ccactctctacagactgtaaggcttattcttattctatccagttctttcccacgcaaaat 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ccactctctacagactgtaaggcttattcttattctatccagttctttcccacgcaaaat 326
Query: 127 tagaatgtgatggacatcatcccaactcattatgcatgaatctattcatttccatcaaac 186
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 327 tagaatgtgatggacatcatcccaactcattatgcatgaatctattcattttcatcaaac 386
Query: 187 agcaagcaagtttgttagcccctctgattgtgcaagaagtgtgcatcttcttcatgcatt 246
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 387 agcaagcaagtttgttagcccctctgattgtgcaagaagtgtgcatcttcttcaggaatt 446
Query: 247 atgcaatacatatgatagaaggctttcattctgtttttgcatgttagtgactcttgacat 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atgcaatacatatgatagaaggctttcattctgtttttgcatgttagtgactcttgacat 506
Query: 307 gtgacatcagttatttttatttgttttattttactttttccattttcttccttttttctt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgacatcagttatttttatttgttttattttactttttccattttcttccttttttctt 566
Query: 367 tttttgcacatttttattagatattttctttatatacatttcaaatttcaaatgctatcc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tttttgcacatttttattagatattttctttatatacatttcaaatttcaaatgctatcc 626
Query: 427 tgaaagttccctttaccctcctaacgcactgctcccctacccacccactcccacttcttg 486
|||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct: 627 tgaaagttccctataccctcccaacgcactgctcccctatctacccactcccacttcttg 686
Query: 487 cccctggcattctcctgtactggggaatgtaaagtttgcaataccaagggggcttttttt 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cccctggcattctcctgtactggggaatgtaaagtttgcaataccaagggggctttttt- 745
Query: 547 cccatgaatggccaaataggccatcttctgctacttatgcagccagagacacgagctctg 606
|||| | ||||||||||||||||||||||||||| |||||||| |||||||| |||| ||
Sbjct: 746 cccaaggatggccaaataggccatcttctgctacatatgcagctagagacacaagctatg 805
Query: 607 agggc-actggttagttcatattgttgttccaccgatagggttgcagaccccttcagct 664
||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 806 gggggtactgggtagttcatattgttgttccacctatagggttgcagaccccttcagct 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_j11.g1 MSMg01no133_j11.g1 CHROMAT_FILE:
MSMg01no133_j11.g1 PHD_FILE: MSMg01no133_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:26 2005
(608 letters)
>mm_chr13_10358180_10359183
Length = 1004
Score = 998 bits (516), Expect = 0.0
Identities = 558/580 (96%), Gaps = 16/580 (2%)
Strand = Plus / Minus
Query: 1 acttgtccactccacgctttgagtattggaattgtgacgctgcctcgtctgctggtgagt 60
||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct: 572 acttgtccactccacgctttgagtattggaattgtgacgctgccttgtctgccg----gt 517
Query: 61 gtgtgagactctccttgcacgcaagggttggaagtaagagaggaaaggagcattggggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gtgtgagactctccttgcacgcaagggttggaagtaagagaggaaaggagcattggggac 457
Query: 121 tcgcatccatatggatgcatttttcaaaaccgcagaccttgttttgtggataagtgtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcgcatccatatggatgcatttttcaaaaccgcagaccttgttttgtggataagtgtttt 397
Query: 181 gaacctgtctgaagtctgtaagcatatatgccaccatccacccacccgactccactgata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaacctgtctgaagtctgtaagcatatatgccaccatccacccacccgactccactgata 337
Query: 241 ttcttggcagggttttgaaagggtggcagactctgctgttag----ttttactgaccact 296
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 336 ttcttgacagggttttgaaagggtggcagactctgctgttagggaa----actgaccact 281
Query: 297 tcattgtaagctttcaacagatctttcctttccctctttgcctctgagattcaacaagat 356
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 280 tcattgtgagctttcaacagatctttcctttccctctttgcctctgaggttcaacaagat 221
Query: 357 agaaaatgtaccattcctgg----acacacacacacacacacacacacacagcactttgc 412
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 220 aggaaatgtaccattcctggacacacacacacacacacacacacacacacagcactttgc 161
Query: 413 ccccgcccccacccctttttgggttactatttgaaaacagaacatattcttaaaagcctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 ccccgcccccacccctttttgggttactatttgaaaacagaacatattcttaaaagcctg 101
Query: 473 cttaataattatggagtccagagcgtttcatattgggaaagcacttattctgcaggaacg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 cttaataattatggagtccagagcgtttcatattgggaaagcacttattctgcaggaacg 41
Query: 533 gttcaacacggtttcctgtgtttaaaacagtgctagtgga 572
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 gttcaacacggtttcctgtgtttaaaacagtgctagtgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1004
Length adjustment: 10
Effective length of query: 598
Effective length of database: 994
Effective search space: 594412
Effective search space used: 594412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
