Query= MSMg01no135_b11.b1 MSMg01no135_b11.b1 CHROMAT_FILE:
MSMg01no135_b11.b1 PHD_FILE: MSMg01no135_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:07 2005
(654 letters)
>mm_chr13_51870470_51871521
Length = 1052
Score = 1123 bits (581), Expect = 0.0
Identities = 629/651 (96%), Gaps = 14/651 (2%)
Strand = Plus / Plus
Query: 5 gaattctagaatgatccttgaagcaacctcaggcctctatatccacatataacatccaca 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctagaatgattcttgaagcaacctcaggcctctatatccacatataacatccaca 266
Query: 65 tacataaaaccacatatacacatgcatatacacatataacacacacacaaaacacatata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tacataaaaccacatatacacatgcatatacacatataacacacacacaaaacacatata 326
Query: 125 tacatgcatagacaatacacacacacacacacacagagccacatcctcttactcaggtcc 184
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 327 tacatgcatagacaatacacacacacacacaca--gagccacatcctcttactcaggtcc 384
Query: 185 ttcctggctaccacccagaaaagaggcaaaaataaataaa-aaaacccaaacaaataaaa 243
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 385 ttcctggctaccacccagaaaagaggcaaaaataaataaacaaaac--aaacaaataaaa 442
Query: 244 tggggcttcacatccacatccacagaattactcaggcttccacagggaccaatggctcca 303
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 443 tggggcttcacatccacatccatagaat-actcaggcttccacagggaccaatggctcca 501
Query: 304 gccacactggtgtcacatgggcaccaggttctgtacacaagtgtctgtcccctcgtccct 363
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 gccacattggtgtcacatgggcaccaggttctgtacacaagtgtctatcccctcgtccct 561
Query: 364 gccacactgtgcctcactcgtttccaagaaaccttactccaaggatgtccagatgaaacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gccacactgtgcctcactcgtttccaagaaaccttactccaaggatgtccagatgaaacc 621
Query: 424 acagcttttagacacctggtgtcaataaatactgaggataaactcagcccgcagcatcag 483
||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 622 acagcttctagacacctggtgtcaata--------ggataaactcagcccgcagcatcag 673
Query: 484 tgctcgggcagggtcagccctgaggaatctccgcctctactgcagttctgagggtgggtt 543
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 674 tgctcgggcagggtcagccctgaggaatctccgcttctactgcagttctgagggtgggtt 733
Query: 544 aagaaatcactcgcattttcatccaagtaagagcatctgcaagatgacacaggacacata 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 734 aagaaatcactcgcattttcatccaagtaagagcatctgcaagatgacacaggacacaaa 793
Query: 604 agcataaacagatcagctcctccccactcctggtcgccagccatctttctc 654
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 794 agcataaacagatctgctcctccccactcctggtcgccagccatctttctc 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1052
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1042
Effective search space: 671048
Effective search space used: 671048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_b11.g1 MSMg01no135_b11.g1 CHROMAT_FILE:
MSMg01no135_b11.g1 PHD_FILE: MSMg01no135_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:07 2005
(623 letters)
>mm_chr13_52012036_52013058
Length = 1023
Score = 963 bits (498), Expect = 0.0
Identities = 510/514 (99%)
Strand = Plus / Minus
Query: 110 acaggaccgaagacccgtgtgttcctgaccgtgtgctcaggagtacccaggtgacctaca 169
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 acaggaccgaagacccatgtgttcctgaccgtgtgctcaggagtacccaggtgacctaca 964
Query: 170 aaccctccccaactgagctcagaggctactgggacaggaggtgggcgccctgaaggggca 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 aaccctccccaactgagctcagaggctactgggacaggaggtgggcgccctgaaggggca 904
Query: 230 taagccccgcagttaggttccctccttgcttctgcccaggtagcccgttctcggcaaaaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 taagccccgcagttaggttccctccttgcttctgcccaggtagcccgttctcggcaaaaa 844
Query: 290 aaaaaaaaaaaaaaaaaaaacagttcggaatggacacggatgataaacttgcatccacgc 349
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 aaaaaacaaaaacaaaaaaccagttcggaatggacacggatgataaacttgcatccacgc 784
Query: 350 ctttggggaggctggctgaagggggttgcacacaggcgtgggctgcacagtggggcggtg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ctttggggaggctggctgaagggggttgcacacaggcgtgggctgcacagtggggcggtg 724
Query: 410 cacctgggggtgtgaacactgagggtttgcactccggctaatgtacccactcaggggagc 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cacctgggggtgtgaacactgagggtttgcactccggctaatgtacccactcaggggagc 664
Query: 470 gcacagggagttgaggcacacagtcccaggtacttccaccctttgatgttcacggagcac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gcacagggagttgaggcacacagtcccaggtacttccaccctttgatgttcacggagcac 604
Query: 530 tgtcatcagctttggtcactgctgcctttgccctggacgactcgactcgctgcctgcaga 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgtcatcagctttggtcactgctgcctttgccctggacgactcgactcgctgcctgcaga 544
Query: 590 ccctacctgcccttgggggttggaggtaaggtgg 623
||||||||||||||||||||||||||||||||||
Sbjct: 543 ccctacctgcccttgggggttggaggtaaggtgg 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
