BAC Information

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BAC

Clone NameMSMg01-136J17
Chromosome13 (Build37)
Map Location 101,843,753 - 101,844,115
singlet/doubletsinglet
Overlap genenone
Upstream geneBdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136J17.T7 (MSMg01no136_j17.b1)MSMg01-136J17.TJ (MSMg01no136_j17.g1)
ACCAG342763AG342764
length720713
length of high quality
(start - end)		666 (55 - 720)548 (80 - 627)
definitionCHROMAT_FILE: MSMg01no136_j17.b1 PHD_FILE: MSMg01no136_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:03 2005CHROMAT_FILE: MSMg01no136_j17.g1 PHD_FILE: MSMg01no136_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGGGGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAG
GATCCGCGGAATTCTTTGTTCTCCTCTGAGCCCCATTTTTTAATGGGGTT
ATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATA
TTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTT
GGTGGTCTCTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTG
GAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCA
TTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTT
TTTCCTATCTAATTTTCAACAAAGGTGGCAAAAACAGGCATCGGAGGAAA
GCCAGTCTTCCTGACAAGTGGTCCCGCCAGCCTGGATAAGCACATGCAGA
AGAATGAAGCTCGAAACACAGCTCTCACTCTGCACAGACAGCAATTAAAA
GTCGATCCAGACCTTACTGTAAGAAACCCTACACCACTAGATTAAAACAG
CTCAAGAAACAGATGCGGGCAAGGACATTCGGAGAAGGAATCTGAGAGCT
CAGGAACTACAAATGATGAACAGGAGGACAGCATGAAGTTAAAAACTTTC
TTATATTTTTGGTTGTGCACCTAGCCTTTAATGGCTTAGCCATCTCTCCA
GCCCAGTTAAAAACTTTCTG

CCCCCCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGACTCACTGAGAGATGG
CTCAGCAGTTAAGAGTGCATACTGCTCTTGCAGAGGACCAGAGTTAAGTT
CCTGAACTTATGTGAGGTAGGTCACAACCTAACACCAGCTCCCGAGGATC
TAATGTGTTCTGGCCTCCTCAGGAAACCATGTTTACAAACACCTCCCCCC
TTACATATAATTAAGATGCTAAAATAAGGGACTGGAGAGATGATGGCTCA
GTCGTTCAGCGCATTGGTTGCTATTCTAGAGGACTCAGGTTTGATTCCCA
GCACCCACATAGTGGTTCACAAACATTTACAGTTTCACTTCTAGGAGATA
CCACACCCTTTTCTGGTCTCTGCTATCACCAGGCACACAAATGGTGCACA
GACATTGAATTAGTCAGGGTTCTCTAGAGTCACAGAGCTTATGGAGAGTC
TCTATATAGTAAAGGAATTTACTGATGACTTACAGTCTGCAGTCCGATTC
CCAACAATGGTTCAGTAGTAGCTGTGAATGGAAGTGCAAGGATCTAGCAG
TTACTTAGTCCCACACGACAAGCAGGCGAAAGAATGAGAGTGAGACTCCC
TTCTTCCAATGTCCTTATATGGTCTCCAGTATAAGGTGTAGCTCAGATTA
AAGGTGTGTGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_j17.b1 MSMg01no136_j17.b1 CHROMAT_FILE:
MSMg01no136_j17.b1 PHD_FILE: MSMg01no136_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:03 2005
         (666 letters)



>mm_chr13_101843058_101844120
          Length = 1063

 Score =  654 bits (338), Expect = 0.0
 Identities = 358/366 (97%), Gaps = 3/366 (0%)
 Strand = Plus / Minus

                                                                        
Query: 301  ctatctaattttcaacaaaggtggcaaaaacaggcatcggaggaaagccagtcttcctga 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 ctatctaattttcaacaaaggtggcaaaaacaggcatcggaggaaagccagtcttcctga 999

                                                                        
Query: 361  caagtggtcccgccagcctggataagcacatgcagaagaatgaagctcgaaacacagctc 420
            |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998  caagtggtcctgggagcctggataagcacatgcagaagaatgaagctcgaaacacagctc 939

                                                                        
Query: 421  tcactctgcacagacagcaattaaaagtcgatccagaccttactgtaagaaaccctacac 480
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 938  tcactctgcacagacagcaactaaaagtcgatccagaccttactgtaagaaaccctacac 879

                                                                        
Query: 481  cactagattaaaacagctcaagaaacagatgcgggcaaggacattcggagaaggaatctg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878  cactagattaaaacagctcaagaaacagatgcgggcaaggacattcggagaaggaatctg 819

                                                                        
Query: 541  agagctcaggaactacaaatgatgaacaggaggacagcatgaagttaaaaactttcttat 600
            ||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||
Sbjct: 818  agagctcaggaactacaaatgatgaacaggacg---gcatgaagttaaaaactttcttat 762

                                                                        
Query: 601  atttttggttgtgcacctagcctttaatggcttagccatctctccagcccagttaaaaac 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761  atttttggttgtgcacctagcctttaatggcttagccatctctccagcccagttaaaaac 702

                  
Query: 661  tttctg 666
            ||||||
Sbjct: 701  tttctg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1063
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1053
Effective search space:   690768
Effective search space used:   690768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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