BAC Information

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BAC

Clone NameMSMg01-136O13
Chromosome13 (Build37)
Map Location 103,020,835 - 103,021,000
singlet/doubletsinglet
Overlap genenone
Upstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
Downstream geneCd180, Mast4, EG621312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136O13.T7 (MSMg01no136_o13.b1)MSMg01-136O13.TJ (MSMg01no136_o13.g1)
ACCAG342981AG342982
length679677
length of high quality
(start - end)		169 (52 - 220)554 (78 - 631)
definitionCHROMAT_FILE: MSMg01no136_o13.b1 PHD_FILE: MSMg01no136_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:26 2005CHROMAT_FILE: MSMg01no136_o13.g1 PHD_FILE: MSMg01no136_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCNNNNTTCATAATTTGCGCCGCTAAACGACTCCTAATGCGAGAGAA
TCCGCGGAATTCTTCAGTTAACGGAATCCTGTGTGTATTGTATTTACAAA
GCATGAAGGCGTGGGTGGAAGCACTCCTCACCAGCTCCCTGTTCCAATAC
ATCCATGAGCCCCCTGCCCCAGAAGAAACCAGAATGTGTTGTGTCACATA
ATTTAAAAACAGCCTGATGNTTGCCCAGTCTGACCAAGTTTAAAGCTTTT
CCATTCAAAGAAAGTGAGAAGAAAAAGAGAANACTAGCAAACATGAACGA
AACAGAGCTAACCAAGGTTCTGCGNNTCTTCCTGGNTTACCTTTATCTAA
TAATTGGGGGTGACAGGGGNAAATGNNNNNTTTTGGTTTCTATTTCCTTC
ACCTTTTTCGTCTATAGGGGAAAAAAATACNACCGCCCAACCATTTGCTC
AANGGTGCAACCTGAACAAAGGGGATTTATATTCCCGGAACTTTCTTANN
NAAAAANCNCNAAAANNNNNNNNCCCNNNNNNNNGGNNNCCCCGTGCCCC
CCCCCCCCCCCTTGTTGGTTTGTTNNTGGGGAATTTTATTAAAAATGCCC
CCCCCCCCTTGCCCNCCCNNNNCCNNNNTGNNNCNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCCCCCCCAGCCGA

TCCGCNANNNCCCATGATATGGTAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTACATTTGGGAAGTTTTC
TTCTATAATTTTGTTGAAGATATTTGCTCGCCCTTTAAGTTGAAAATCTT
CATTCTCATCTACTCCTATTATCCGTATGTTTGGTCTTCTCATTGTGTCC
TGGATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTTTATTTTC
TTTGATTGTTGTGCTGATGTTGTCTATGGAATCTTCTGCACCTGAGATTC
TCTCTTCCATCTCTTGTATTCTGTTGCTGATGCTTGCATCTATGGTTCCA
GATTTCTTTCTTAGGTGTTCTATCTCCAGCGTTGCCTCACTTTGGGTTTT
CTTTATTGTGTCTACTTCTCCCCTTAGGTCTTGGATGGTTTTATTCAATT
CCATCACCTGTTTGGTTGTGTTTTCTTGCAATACTTTAAGGGATTTTTGT
GCTTCCTCTTTAAGGTCTTCTACCTGTCTAGCAGTGTTCTCCTGTATTTC
TTTAATGACTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAA
ATATGCTTTTAAATCTGGGTCTAGTTTTTGGGGTGTGCTGCGCTGTCCCC
CCCTGTTTGTCTTTTACACTTCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_o13.b1 MSMg01no136_o13.b1 CHROMAT_FILE:
MSMg01no136_o13.b1 PHD_FILE: MSMg01no136_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:26 2005
         (169 letters)



>mm_chr13_103020630_103021201
          Length = 572

 Score =  223 bits (115), Expect = 6e-63
 Identities = 153/169 (90%), Gaps = 9/169 (5%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttcagttaacggaatcctgtgtgtattgtatttacaaagcatgaaggcgt---- 61
           |||||||||||| || ||||||||||||||||||||||||||||||||||| || |    
Sbjct: 371 gaattcttcagtgaatggaatcctgtgtgtattgtatttacaaagcatgaa-gcttacaa 313

                                                                       
Query: 62  -gggtggaagcactcctcaccagctccctgttcc-aatacatccatgagccccctgcccc 119
              ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 312 a--gtggaagtactcctcaccagctccctgttccaaatacatccatgagccccctgcccc 255

                                                            
Query: 120 agaagaaaccagaatgtgttgtgtcacataatttaaaaacagcctgatg 168
           |||||||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct: 254 agaagaaaacagaatgtgttgtgtcacataattaaaaaacagcttgatg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 572
Length adjustment: 8
Effective length of query: 161
Effective length of database: 564
Effective search space:    90804
Effective search space used:    90804
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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