BAC Information

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BAC

Clone NameMSMg01-137G18
Chromosome13 (Build37)
Map Location 107,703,149 - 107,781,923
singlet/doubletdoublet
Overlap geneIpo11, Dimt1, Kif2a
Upstream geneOlfr717-ps1, LOC631097, EG620949
Downstream geneLOC100040322, LOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137G18.T7 (MSMg01no137_g18.b1)MSMg01-137G18.TJ (MSMg01no137_g18.g1)
ACCAG343354AG343355
length716721
length of high quality
(start - end)		582 (65 - 646)518 (75 - 592)
definitionCHROMAT_FILE: MSMg01no137_g18.b1 PHD_FILE: MSMg01no137_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:06 2005CHROMAT_FILE: MSMg01no137_g18.g1 PHD_FILE: MSMg01no137_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,703,149 - 107,703,731)(107,781,406 - 107,781,923)
sequence
ATCATAATTTGCGGCGCTATACGACTCCTATTTCAAGAGGAGGCGCGGAA
TTCGCATATTGCACACTATTGGCTTATTCAACATTAACAGAAAGATTACA
GGGCATCAGGACTTTGTTCCTGTGGGCTGGGGGCTTATCTTTGTTCACAT
AGCAACCAGTTGATGTATGACTTTACCCGGCGCCAAGGGGCAATAGACAG
AGGGGAGGTTTGGCCAGATGGTGTTGACTTAGATAATATAGCCCTGCTGG
TCCTTGCATACCTTTTTATCTTTACAGTCAAGATGTTCTTAGGAATGCCT
TAACAACAGCCCTGCCTTGCCATGCCTGGAGGCTGTTCTGCTTTGTTCTT
AGTCCCAGGCCGGGGCTGTGGGCTCTTAAACTCACAAGTTACAATATTTT
ATCTTCCTTCACTAGGATTACAAGCCTGTACCTCTATGCCTATCCCGGTG
CCCTTATAAGAAGAAAATGGAAACAGAAACACAGATCACTTGGCATAGAT
CATGTGACAATATTATAGGCAAAGATTATAGGGGCAAAGATTAGAATCAT
TCAATCACATGCCAAGAAACACCTACTATTGCTGGCCACAACCAGGAACT
ATCAAAGACTAATCCTATGGGCTCTCAAAGTAGGCAAACTTTGTGCTTGT
GGATTTCCAGCTACCTAGTCTGTAGGAGAATAAACCTAGGTAACTGTAAA
CTTTCAGTTTGTGGCC

CACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTTAGTATCTGTATAAATAGGAA
ATGAGTTGGTTGCCTTAATCTCTGCAGTAGTCAAGTCTTTGAAACCTGTA
ATGAAATCTTTTTTGGATAACTGGCCATGTTTGTTTCATAGTAATTTGAC
ACTTGATCTGAATAAAGGAATCAATACTGATTACCTCCTTAGATCCAAAG
ATGTTATTTACCACCAGTCCCTCCATCCGAGAGCAAAGATGCTCCAGAAT
CCATGGTTTTCATTTTTATTTATTATTTTGTGTGAACATAGGTGTGTGCA
TGCCGCCATTCAGGCGGCTCTCAGAGGACCACTGTCAGTTGTTAGTTCTC
ACCTCCTACCTTGTATGCTCTGGACTCTCTGTCTTGCTGTAGGAGTGTTG
GGATTGAAGGAACACACCACCACATCTGACTATTTTTTGTGGGGATAGGA
TTGACTCCATCCCTTTAGACTTTTGCAGAAAGTGACTTTACCTGCTGAGC
CATCTTGCCAGCCTCCAAATGCAATTTTTTTTTCTTTTTGAGAATAAACA
TTAGATCACAGAAAAGAAATCCCACATATGTGATGAATTTCAATCAAAAT
GAAGCTGCGTCAGAAATATTACACAAAATGATCTTCAAGGAAATTGGAGA
TCTCTGAGAAAGAGCACCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_g18.b1 MSMg01no137_g18.b1 CHROMAT_FILE:
MSMg01no137_g18.b1 PHD_FILE: MSMg01no137_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:06 2005
         (582 letters)



>mm_chr13_107702950_107703931
          Length = 982

 Score = 1065 bits (551), Expect = 0.0
 Identities = 575/583 (98%), Gaps = 1/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actattggcttattcaa-cattaacagaaagattacagggcatcaggactttgttcctgt 59
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 actattggcttattcaaacattaacagaaagattacagggcatcaggactttgttcctgt 259

                                                                       
Query: 60  gggctgggggcttatctttgttcacatagcaaccagttgatgtatgactttacccggcgc 119
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 260 gggctgggggcttatctttgttcacacagcaaccagttgatgtatgactttacccggcgc 319

                                                                       
Query: 120 caaggggcaatagacagaggggaggtttggccagatggtgttgacttagataatatagcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaggggcaatagacagaggggaggtttggccagatggtgttgacttagataatatagcc 379

                                                                       
Query: 180 ctgctggtccttgcatacctttttatctttacagtcaagatgttcttaggaatgccttaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgctggtccttgcatacctttttatctttacagtcaagatgttcttaggaatgccttaa 439

                                                                       
Query: 240 caacagccctgccttgccatgcctggaggctgttctgctttgttcttagtcccaggccgg 299
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caacagccctgccctgccatgcctggaggctgttctgctttgttcttagtcccaggccgg 499

                                                                       
Query: 300 ggctgtgggctcttaaactcacaagttacaatattttatcttccttcactaggattacaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 ggctgtgggctcttaaactcacaagttacaatattttatcttccttcactaagattacaa 559

                                                                       
Query: 360 gcctgtacctctatgcctatcccggtgcccttataagaagaaaatggaaacagaaacaca 419
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 560 gcctgtacctctatgcctatcctggtgcccttataagaagaaaatggaaacagagacaca 619

                                                                       
Query: 420 gatcacttggcatagatcatgtgacaatattataggcaaagattataggggcaaagatta 479
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatcacttggcatagatcatgtgacaatattataggcaaagattataggggcaaagatta 679

                                                                       
Query: 480 gaatcattcaatcacatgccaagaaacacctactattgctggccacaaccaggaactatc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaatcattcaatcacatgccaagaaacacctactattgctggccacaaccaggaactatc 739

                                                      
Query: 540 aaagactaatcctatgggctctcaaagtaggcaaactttgtgc 582
           ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 740 aaagactaatcctatgggccctcaaagtaggcaaactttgtgc 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no137_g18.g1 MSMg01no137_g18.g1 CHROMAT_FILE:
MSMg01no137_g18.g1 PHD_FILE: MSMg01no137_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:06 2005
         (518 letters)



>mm_chr13_107781373_107782290
          Length = 918

 Score =  978 bits (506), Expect = 0.0
 Identities = 515/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttagtatctgtataaataggaaatgagttggttgccttaatctctgcagtagtcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 actcttagtatctgtataaataggaaatgagttggttgccttaatctctgcagtagtcaa 492

                                                                       
Query: 61  gtctttgaaacctgtaatgaaatcttttttggataactggccatgtttgtttcatagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gtctttgaaacctgtaatgaaatcttttttggataactggccatgtttgtttcatagtaa 432

                                                                       
Query: 121 tttgacacttgatctgaataaaggaatcaatactgattacctccttagatccaaagatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tttgacacttgatctgaataaaggaatcaatactgattacctccttagatccaaagatgt 372

                                                                       
Query: 181 tatttaccaccagtccctccatccgagagcaaagatgctccagaatccatggttttcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tatttaccaccagtccctccatccgagagcaaagatgctccagaatccatggttttcatt 312

                                                                       
Query: 241 tttatttattattttgtgtgaacataggtgtgtgcatgccgccattcaggcggctctcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttatttattattttgtgtgaacataggtgtgtgcatgccgccattcaggcggctctcag 252

                                                                       
Query: 301 aggaccactgtcagttgttagttctcacctcctaccttgtatgctctggactctctgtct 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aggaccactgtcagtcgttagttctcacctcctaccttgtatgctctggactctctgtct 192

                                                                       
Query: 361 tgctgtaggagtgttgggattgaaggaacacaccaccacatctgactattttttgtgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 tgctgtaggagtgttgggattgaaggaacacaccaccacatctgactattttttgtgggg 132

                                                                       
Query: 421 ataggattgactccatccctttagacttttgcagaaagtgactttacctgctgagccatc 480
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 131 ataggattgactccatccctttagacttttgcagaaagtgactttacccgctgaaccatc 72

                                                 
Query: 481 ttgccagcctccaaatgcaatttttttttctttttgag 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ttgccagcctccaaatgcaatttttttttctttttgag 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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