BAC Information

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BAC

Clone NameMSMg01-137H15
Chromosome13 (Build37)
Map Location 55,421,008 - 55,421,459
singlet/doubletsinglet
Overlap geneRab24
Upstream geneCplx2, Thoc3, LOC100040543, 4732471D19Rik, 4833439L19Rik, Arl10, D13Wsu177e, Higd2a, Cltb, Ubxd8, Rn4.5s-ps3, Rnf44, BC040758, Gprin1, Sncb, Eif4e1b, Tspan17, Unc5a, Hk3, Uimc1, LOC622707, Zfp346, Fgfr4, Nsd1
Downstream genePrelid1, Mxd3, Lman2, Rgs14, Slc34a1, Pfn3, F12, Gprk6, Prr7, Dbn1, Pdlim7, Dok3, Ddx41, BC021381, Tmed9, B4galt7, Caml, Ddx46, B230219D22Rik, 2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137H15.T7 (MSMg01no137_h15.b1)MSMg01-137H15.TJ (MSMg01no137_h15.g1)
ACCAG343391AG343392
length705704
length of high quality
(start - end)
471 (71 - 541)244 (78 - 321)
definitionCHROMAT_FILE: MSMg01no137_h15.b1 PHD_FILE: MSMg01no137_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:10 2005CHROMAT_FILE: MSMg01no137_h15.g1 PHD_FILE: MSMg01no137_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGGCGCG
GAATTCCCAGAGGTTCCCGGACCTGACTCTTGTCTGGGCTGGAATGGTCA
AGCGTCTGAGCTATTCCAGGTGCCTCTCACAGCAGAGGTGGCACCTGCCT
GTGCTGGCCCATGGAACGGAGGCAGTATTGGGCTGACTGTGGGCATGAGG
AGGGATAAGGGCTGACTTGAATCCCAGGCTTCTGTCCTGGCCAGAACTTC
TGTCCAGACTATTTAAGTAGCTTCTGAACTGTAAATAAAATTGATGCATT
TCCTTGCTGTGTGCACTGGGTGTCTTAACACCTAGTTGTTCCTGGGGCCA
CGTGGGCCTCACTTATATGAAGACTTCCATCTGGAACCAAGTAACAGTTT
CCTAAGACTATCACTGAAACCATGGATAAACAATGGGCTCTTTTTCTTAT
GGCCTTTTTATTAGTGCTTACATGTCTGAGTGTAGAGCAAATACCAGGGC
TTCTAACATACTAGGCAAGAACTATATCACTTTTTTTCTTCTGTGGGGGT
GAAGATAGGTTGAGGCTGGGATGGAAAAGTACAAAGCTCAGGATAAGACG
AAGGAAAGCACCTCAGCTGTGCCCAGATACAAAAGGCTTGTGTACATCAA
CCTCAAGACGAGTTGGTTAGGCCAGCTCTACCTGTTGTGCTATGCCTGAC
CCTGT
CCCGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGTCTGTTGTGGAGTCCAT
GTGTCCCAAGCCAGCCATGTGTGGTGGCTCCTAACTGTAATCCCAGAACG
CAGGAGACTATGAGGATCAAGAGGAGGCTAGCCTGGCCTACACTGTGAGT
TCCAGGCAAGTCTGGACTATATGGTGAGAATCTCTTTTGTAAAAGAGAAG
GTAGCCAGAGAGATGGATCTGTGGTTAAGAAAACTTGCTGGGTTCAGTTC
CTAGCACCCACATGATGATCAATTATCTATAACTCCAGTTCCAGAGGATC
CTATGTCCTCTTCTGGCCTCCCTGGTACCAGGCACACACATGGTACACAT
ATGTACATGGAAGAAAGAGGGACCCGTACATGTAAATAAATCTCTTGGGC
TGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCC
CGAGTTCAAACCTCAGCAACCACATGGTGGCTCATAACCATCTGTAATGA
GATCTGATGACTTCTTCTGGGGTATCTGAAGACAGCTACAATGTACTTAG
ATATACTAATAAATAAATCTGAGCTGGAGAGATGGCTCAGAGGTTAAGAG
CACCGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATG
GTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_h15.b1 MSMg01no137_h15.b1 CHROMAT_FILE:
MSMg01no137_h15.b1 PHD_FILE: MSMg01no137_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:10 2005
         (471 letters)



>mm_chr13_55420632_55421502
          Length = 871

 Score =  799 bits (413), Expect = 0.0
 Identities = 448/471 (95%), Gaps = 20/471 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgactcttgtctgggctggaatggtcaagcgtctgagctattccaggtgcctctcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 acctgactcttgtctgggctggaatggtcaagcgtctgagctattccaggtgcctctcac 769

                                                                       
Query: 61  agcagaggtggcacctgcctgtgctggcccatggaacggaggcagtattgggctgactgt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 768 agcagaggtggcacctgcctgtgctggcccatggaacggaggaagtattgggctgactgt 709

                                                                       
Query: 121 gggcatgaggaggga-taagggctgacttgaatcccaggcttctgtcctggccagaactt 179
           ||||||||||| ||| |||||||||||||||||||||||                  |||
Sbjct: 708 gggcatgagga-ggagtaagggctgacttgaatcccagg------------------ctt 668

                                                                       
Query: 180 ctgtccagactatttaagtagcttctgaactgtaaataaaattgatgcatttccttgctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctgtccagactatttaagtagcttctgaactgtaaataaaattgatgcatttccttgctg 608

                                                                       
Query: 240 tgtgcactgggtgtcttaacacctagttgttcctggggccacgtgggcctcacttatatg 299
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgtgcactgggtgtcaaaacacctagttgttcctggggccacgtgggcctcacttatatg 548

                                                                       
Query: 300 aagacttccatctggaaccaagtaacagtttcctaagactatcactgaaaccatggataa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aagacttccatctggaaccaagtaacagtttcctaagactatcactgaaaccatggataa 488

                                                                       
Query: 360 acaatgggctctttttcttatggcctttttattagtgcttacatgtctgagtgtagagca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 acaatgggctctttttcttatggcctttttattagtgcttacatgtctgagtgtagagca 428

                                                              
Query: 420 aataccagggcttctaacatactaggcaagaactatatcactttttttctt 470
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aataccagggcttctaacatactaggcaagaactatatcactttttttctt 377


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)