Query= MSMg01no137_l04.b1 MSMg01no137_l04.b1 CHROMAT_FILE:
MSMg01no137_l04.b1 PHD_FILE: MSMg01no137_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:29 2005
(187 letters)
>mm_chr13_47259857_47260442
Length = 586
Score = 333 bits (172), Expect = 5e-96
Identities = 181/184 (98%), Gaps = 1/184 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctaccctaagcctatattaaggggtgctgtgctgatttctgtgaacatgtgta 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctaccctaagtctatattaaggggtgctgtgctgatttctgtgaacatgtgta 263
Query: 64 ggaatttcagtttccacagaccctttttgatttattgtatttttttggagcaggccattt 123
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 ggaatttcagtttccac-gaccctttttgatttattgtatttttctggagcaggccattt 322
Query: 124 ttgtaaagcttaaaggatatataaaggatgtttaaatttaaagtgtcagtaaagtgcccc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgtaaagcttaaaggatatataaaggatgtttaaatttaaagtgtcagtaaagtgcccc 382
Query: 184 agac 187
||||
Sbjct: 383 agac 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 586
Length adjustment: 8
Effective length of query: 179
Effective length of database: 578
Effective search space: 103462
Effective search space used: 103462
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no137_l04.g1 MSMg01no137_l04.g1 CHROMAT_FILE:
MSMg01no137_l04.g1 PHD_FILE: MSMg01no137_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:29 2005
(605 letters)
>mm_chr13_47421559_47422563
Length = 1005
Score = 876 bits (453), Expect = 0.0
Identities = 466/471 (98%), Gaps = 2/471 (0%)
Strand = Plus / Minus
Query: 137 gagcactcatttacataaaataaataaatctttttt--aaaaaaaaaatctgggccaggt 194
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1005 gagcactcatttacataaaataaataaatcttttttaaaaaaaaaaaatctgggccaggt 946
Query: 195 atggcagcacatgcctttaatcccagaactcaagaggcagggcatataaatctttatgag 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 atggcagcacatgcctttaatcccagaactcaagaggcagggcatataaatctttatgag 886
Query: 255 ttcaagggtagcctgttctgcatatcaaatttcaggctagccaaggctacatagcaagac 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885 ttcaagggtagcctgttctgcatatcaaatttcaggctagccaaggctacatagcaagac 826
Query: 315 cctgtctcaaaataaaaagaattttatggcctcctaattccagtgaaaatggaatttgtg 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 cctgtctcaaaataaaaagaattttatggcctcctaattccagtgaaaatggaatttgtg 766
Query: 375 gccgctttttcttttattttattgttatgtatgatttacaagggagaagcagaaactttt 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 gccgctttttcttttattttattgttatgtatgatttacaagggagaagcagaaactttt 706
Query: 435 agattaaaccactactgtgtttccttgaagcttgataaatgtgtctagtgaagagttcta 494
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 agattaaaccactactgtttttccttgaagcttgataaatgtgtctagtgaagagttcta 646
Query: 495 cttctgttatagctcaatttcttgaccatttgggctctaaagaatgtcatacaaagaata 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 cttctgttatagctcaatttcttgaccatttgggctctaaagaatgtcatacaaagaata 586
Query: 555 agcagattacgttaagttctaacccatagaagatgacagaccaacaggatt 605
||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 585 agcagattatgttaagttctaacccatagaaaatgacagaccaacaggatt 535
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
