BAC Information

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BAC

Clone NameMSMg01-137M09
Chromosome13 (Build37)
Map Location 76,728,900 - 76,729,282
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneLOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276
Downstream geneLOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137M09.T7 (MSMg01no137_m09.b1)MSMg01-137M09.TJ (MSMg01no137_m09.g1)
ACCAG343613AG343614
length736737
length of high quality
(start - end)
501 (63 - 563)383 (73 - 455)
definitionCHROMAT_FILE: MSMg01no137_m09.b1 PHD_FILE: MSMg01no137_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:35 2005CHROMAT_FILE: MSMg01no137_m09.g1 PHD_FILE: MSMg01no137_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGAGCGCGGAATTC
ATGAAATTTCTCGCAAATGGATAGAACTAGAAAATATCATCCTGAGTAAG
GTAACCAAACTGCAAAAGAACACACATGATATGCACTGACTGATGAGTGG
ATATTAGCCCAAAAGCTCAGAATACCTAAGATACAGTTCACAGACCACAT
AAAACTCAAGTAGAAGGAAAACCAAAGTTTGGGTGCTTTGGTCCTTCTTA
GAAGGAGCAACAAAATACTCACAGGAGGAAATACGAAGACAACGTGAGGA
ACAGAGACTGAAGGAAATGTGCTACCCAGAGACTGCCCCACCTGGTGATC
CATCCCATAAACAGTCACCACACCCAGACACTATTGTGATGCCAAGAAGT
GAATGCTGACAGGAGCCTGATATAGTTGTCTCCTGAGAGGCTCTGCTAGA
GCCTGACAAATACAGAGGCAGATATTCACAGCCAACCATTTGAACTGATC
ACAAGGTCCCCAAAAGAGGAGTTAGAGAAAGGACTGAAGGAGCTGAAGGG
GGTTGCAATTCCATAGGAAGAACAACAATATCAACCAACCAGACCCCCCA
GAGCTCCCAGGGACTAAACTACCAACCAAGGAATATACATGGAAGGATCA
TATGCTCCAGCTTCATATTGCAGCAAAGGATGGCCTTGTTGGGCATCAAT
AGGAGGAGAGGTCCTGTGAAAGCTTGATGTTCTATA
ATTGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTACAGGAGACTTCTTAAAGCACTGCCTG
CAGTAGATGTTGTGATCAGCCATGTTTCCACTCAGCAACCAGGGTAAGAA
TCGTGTGTATATGGCAGATGTGTGGGAGATGGGGGACAGAAAAGGAGAAA
CGATATGCAGCCAAGCCTGAATGCCCTGATCCTCAAAGTATCAGCATCAA
TGAAAGCTAAGCCTTGAGTCAGGATGAAGTGAAAACAAATGCCTGAAGAA
ACCGAGGTTGTACTGACAATTATTGACTTTGTCATGTTCCTAGGAGTGTG
GGTGCTTTAGAGAGAATTAACATGGTCTTTCTGAAAATGAGACTTAGCTG
TAGAAGAAGTCTAGACTGGTGAGAAAAGACTGTGTGTGAGATCCCTCCTA
GTGGGGTTAATAGGATGAGAAATCCATGTGGCATGGGCAGTATTACAATT
CACTTTCTCACTAGATAAACTGGGCTTAAATCCAGACTTACCTGAGGATG
TAACTAAATGTTATACACCCTGCTTAGACCTCCAGTGCATCTGGAATTTT
ATGATTATTATGAAGATGATGACGACTAAGATTACGAAGATGACGATTAA
CAAGAATAAATATTAATATGACGACCAACAACTATTATGCCCAATAATGA
CTCTACTAACTATATAAAAAAAAAAAACTAATCTNAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_m09.g1 MSMg01no137_m09.g1 CHROMAT_FILE:
MSMg01no137_m09.g1 PHD_FILE: MSMg01no137_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:35 2005
         (383 letters)



>mm_chr13_76728700_76729482
          Length = 783

 Score =  717 bits (371), Expect = 0.0
 Identities = 380/383 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacaggagacttcttaaagcactgcctgcagtagatgttgtgatcagccatgtttccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacaggagacttcttaaagcactgcctgcagtagatgttgtgatcagccatgtttccact 260

                                                                       
Query: 61  cagcaaccagggtaagaatcgtgtgtatatggcagatgtgtgggagatgggggacagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcaaccagggtaagaatcgtgtgtatatggcagatgtgtgggagatgggggacagaaa 320

                                                                       
Query: 121 aggagaaacgatatgcagccaagcctgaatgccctgatcctcaaagtatcagcatcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagaaacgatatgcagccaagcctgaatgccctgatcctcaaagtatcagcatcaatg 380

                                                                       
Query: 181 aaagctaagccttgagtcaggatgaagtgaaaacaaatgcctgaagaaaccgaggttgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagctaagccttgagtcaggatgaagtgaaaacaaatgcctgaagaaaccgaggttgta 440

                                                                       
Query: 241 ctgacaattattgactttgtcatgttcctaggagtgtgggtgctttagagagaattaaca 300
           |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgacaaggaatgactttgtcatgttcctaggagtgtgggtgctttagagagaattaaca 500

                                                                       
Query: 301 tggtctttctgaaaatgagacttagctgtagaagaagtctagactggtgagaaaagactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtctttctgaaaatgagacttagctgtagaagaagtctagactggtgagaaaagactg 560

                                  
Query: 361 tgtgtgagatccctcctagtggg 383
           |||||||||||||||||||||||
Sbjct: 561 tgtgtgagatccctcctagtggg 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)