BAC Information

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BAC

Clone NameMSMg01-138C11
Chromosome13 (Build37)
Map Location 77,145,164 - 77,145,540
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneRfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603, EG666607
Downstream geneAnkrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138C11.T7 (MSMg01no138_c11.b1)MSMg01-138C11.TJ (MSMg01no138_c11.g1)
ACCAG343891AG343892
length714707
length of high quality
(start - end)		544 (71 - 614)568 (73 - 640)
definitionCHROMAT_FILE: MSMg01no138_c11.b1 PHD_FILE: MSMg01no138_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:06 2005CHROMAT_FILE: MSMg01no138_c11.g1 PHD_FILE: MSMg01no138_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTAAATACCGAGAGTGCTAAGATTCCTCAGGTTATTGATTGTT
GTCACTCACAGTCACTTGAAACTCAAGAGAACTCTGCTGTTAGGTGGAAA
CTTTTCTGTTTTTTTCTAACATTTCAGTGATGACAACAGATTGTCTCTGA
ATCTAAGTAGCAAATGTGGGCTAGATTTTTTCTTTTTTTTTTTTAAATTT
ATTTAATGAGCCTTTCATAATGAAAATAATGTTTCAATCAAATATTGCTC
TATTTTCTTCCCCACAATCCCTCTCCTACTTCCTCATTGCTTTTCCCATG
CAACTCCGTGTATTGTGCCAGTTTCTTTGAAAACCCACTGTCTACTTCCT
GCTCCCAAGATGTGCCCGGCTAGTGTTTCAAGGCCACATTCCTAGAGAAA
GCTGACACTTTCTCTTCGAGAAGCCACCAGCTACTTCACCTATGGGTATC
CTTCAAGAGGCCCTCTTCCGTTCATGCAGAGACTCTGGTTGGCTTGGCCT
CAGGCATGTCTTGTGCATGCAGTCACAGCCATTGTGACCACATGTGAGTG
GAGGAGCCCTGTTCAGGATCCACTTTCTGCTAGAGTCATCCCCTACCTGT
GGTTGTGAGGATCTTTCTACCATTCATCTGTACTGATTCCTGAGCCTTGT
GAAAAGGAAAGTGG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTTTAGATCTGTACTTGTTTTATTTTT
TTGATATCTAGTTTTTAAAAGTTCTTTATATTTTTTGAATATTAGCTCTC
TATCAGATATACAGTTGATAAAAATCTTTTCCCATTGAGTTTTCTCTTTT
GGGAATTGTTTAGACTTGTATTCCAGTTATAATTTTTTTTTCTTGTCATC
TAGTTATTTAGTTCTTTATTTATTTTGGATATTAGCTTCTACTCTATGTG
TAGTTGGTTAAAAAAAAACTTTTCTCATTTTATAGGCTGATGCTTTGTCC
AAATGACACTGTCCTTCCTTTAGGTTCTAACTTGTCAGTTTTATGAGGTC
TCATTTGTTAATTGTTAATCTTAATGCCTACTGGTATTCTCTTTAGAAAG
CCTTCTAGTGTGCCAGTGCATTCAAGGCTGCCACCTCTTCTTTTAGGTTC
AGTGTATCTGATTTTATGTCGAGATCTTAGATCCACTGGAGTTGAGTTTT
ATGAGGGTGATAAGTATGGACTTATTTGGATTTTTATACATACAGTTTGA
CGAGCATCATTTGTTGAAGATGCTGCCTTTGTTTTTACTAGTGTGTATTT
CTGGCTTTATCAAAACAATTTCTTCTTCTCCTTCTTCTACTTCTTCTTCT
TCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_c11.b1 MSMg01no138_c11.b1 CHROMAT_FILE:
MSMg01no138_c11.b1 PHD_FILE: MSMg01no138_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:06 2005
         (544 letters)



>mm_chr13_77145164_77146107
          Length = 944

 Score =  721 bits (373), Expect = 0.0
 Identities = 376/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgctaagattcctcaggttattgattgttgtcactcacagtcacttgaaactcaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtgctaagattcctcaggttattgattgttgtcactcacagtcacttgaaactcaagaga 318

                                                                       
Query: 61  actctgctgttaggtggaaacttttctgtttttttctaacatttcagtgatgacaacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actctgctgttaggtggaaacttttctgtttttttctaacatttcagtgatgacaacaga 258

                                                                       
Query: 121 ttgtctctgaatctaagtagcaaatgtgggctagattttttcttttttttttttaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgtctctgaatctaagtagcaaatgtgggctagattttttcttttttttttttaaattt 198

                                                                       
Query: 181 atttaatgagcctttcataatgaaaataatgtttcaatcaaatattgctctattttcttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atttaatgagcctttcataatgaaaataatgtttcaatcaaatattgctctattttcttc 138

                                                                       
Query: 241 cccacaatccctctcctacttcctcattgcttttcccatgcaactccgtgtattgtgcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 cccacaatccctctcctacttcctcattgcttttcccatgcaactccgtgtattgtgcca 78

                                                                       
Query: 301 gtttctttgaaaacccactgtctacttcctgctcccaagatgtgcccggctagtgtttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 77  gtttctttgaaaacccactgtctacttcctgctcccaagatgtgcccgggtagtgtttca 18

                            
Query: 361 aggccacattcctagag 377
           |||||||||||||||||
Sbjct: 17  aggccacattcctagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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