BAC Information

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BAC

Clone NameMSMg01-138D13
Chromosome13 (Build37)
Map Location 70,565,899 - 70,566,487
singlet/doubletsinglet
Overlap genenone
Upstream genePols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
Downstream geneBC018507, EG620473, Adamts16, 8030423J24Rik, LOC627230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138D13.T7 (MSMg01no138_d13.b1)MSMg01-138D13.TJ (MSMg01no138_d13.g1)
ACCAG343942AG343943
length1,397696
length of high quality
(start - end)		---589 (84 - 672)
definitionCHROMAT_FILE: MSMg01no138_d13.b1 PHD_FILE: MSMg01no138_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:11 2005CHROMAT_FILE: MSMg01no138_d13.g1 PHD_FILE: MSMg01no138_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTNNNNTTTTNTTTTTTTTTTNNTTTNTTTNTTTNNN
NTNCNTTTTTTTTTTTTTTNNTNTNNNTTTATTCTCCTCTAATACAAGAG
TTANCCNNNNCNNNTNNNCATTTTTTTATTNNTTTTATCCCTCATTAATA
TATANCCTTCGTACNCCCACATTNCGCCGCCCCCNCCTCCTCTCCTATTN
TCGCGCCGCCNTTTCCCCNTNACCTTNCTACATTCTAAATTTACTANNCA
TTCCGACAACCGCTGCTACACTGCTTATGCGACAGTATTCGCCACACACA
TCAGATATAACACCACAATATGACGGACACCATACACGATAGACANCACG
TTATCTATATCTTATATTGTATATACTATCACCGCATACCATACACACTA
TATTACATTATAATATAATATAAATACAACATATATATCAAACACCACCA
TTACCTNTAAATATTATTTATAATAAACAAAGTAAACACAGCATTTACAA
CGTACACATAAGTTAATATAGACATATTGAGAGAATGAAAGCACACACAC
TATTACGGATGCAACGAACCGAGCGCGAATTAGATTGTGCACCAACCCCA
TATACATAGGTATGGCAAGTGCCACACTTACGCCTGGCTGATACTCACAT
NACCCGCCGCGGTGATGGAGTAGATCGAGCTACGGCGGAGCAGGAGAGGA
ATATGTAGAGAGCGCAGATGAGAAGAANGATGACGGCGTGGAGAGGATCA
GAGCTAGTAACGAGTGATACGCGACCACTCATCGCGCGGGCACGTCATAT
ATAGCGTGACGCACAGACATAAGATCGCAGTATGACGCACGTATAGATGA
AGTCGTATCGAAAATAGTTGAGGACGAGCGAGAGATGTTAGTGATGCGCA
TCTCTACGTCGCGGCTGTTGTCTTATAATTGTGGTTATTATGANCGCGAC
GGTATCGGCGAGTCATACTGTGAGATACTACATACCAGCGGAGCAAGATC
ACGCCGTATAATATATATGTCATGACGGGTATAATCGTGCATGCTAACGA
GCGAGATGACAACGCGCTAATTATATTATAAACGTGATGCGATCGCAGCG
AGCTGCGAGTATACGAGCGAGATATTGTGTTGAAGACGACGCAGTGGCAG
TTAGCGGTGGAGGCAGCGTACGTGGTATGCGCGCCGCCGCTAGACCGATA
TTACCGCGAGGTCGGCGACGCGAGACGAAGAACAGGATCAGGCAGCACAA
TTACTTTAAACACGCGCCCCACCGGATACCTCTTGGATCAGGATATATAG
AGGAGAAGAGAAGAGAGAGAAAGAATACGTAATTCCGAACACATGAAAAC
GACGAGAATGGATATACGGAGCACACCGATGAAGATAGAGGAGCAGN

GTCTTTTNTTCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGCCAGAGGAAGTT
AAAGGGTTCAAGGGTCAGATTGCTTGGTTCTCAAGAACACTAAATCTCCG
TGTAAACAGACTCAGAAAGCATCCGCTCACACAGAAGGCAGAACACAGCA
CACTAGGCATCTCAGCTAGTACCACTCTCTATATACTGTGTAAGTGGGTG
AGTCCAGTTCTTGATGAAATGCCCATGCGTGGCCTGTCGGCTCACAGGAA
TATGTATACAATGAAAGATATGACACACTTTTATCCAGGTGTTAATCCCA
TGCCTGTTGAAGTCGTTTTAAATCCAATCCAGGGTTTTAACCCCACCGTA
GACCATTTAGATAAAAGACACACACAACCTTTATATTTATAATAAGCCTT
AATCAGCACTTGAGCTGGGTAGATAACCACCCTCTAAGCTGTTAGAATTT
ACTTTCCTATAGAAAGCCCCAAATTATTACTTACTACTTATTATATTTCA
TTTGGGCTGTTCTTAACTCCAATTGGCCAGCCCTCACAACCATGTTTTGA
TGACTCAGCTAACCCATGGCCCCATGGCAGCTTCTCCTTCCTCCTGCATC
TTCTTCTTTTTCTCATGCTTCTCCCCTGACCCCAAGCCTGAGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_d13.g1 MSMg01no138_d13.g1 CHROMAT_FILE:
MSMg01no138_d13.g1 PHD_FILE: MSMg01no138_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:12 2005
         (589 letters)



>mm_chr13_70565699_70566687
          Length = 989

 Score = 1139 bits (589), Expect = 0.0
 Identities = 589/589 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgccagaggaagttaaagggttcaagggtcagattgcttggttctcaagaacactaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgccagaggaagttaaagggttcaagggtcagattgcttggttctcaagaacactaa 260

                                                                       
Query: 61  atctccgtgtaaacagactcagaaagcatccgctcacacagaaggcagaacacagcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctccgtgtaaacagactcagaaagcatccgctcacacagaaggcagaacacagcacac 320

                                                                       
Query: 121 taggcatctcagctagtaccactctctatatactgtgtaagtgggtgagtccagttcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggcatctcagctagtaccactctctatatactgtgtaagtgggtgagtccagttcttg 380

                                                                       
Query: 181 atgaaatgcccatgcgtggcctgtcggctcacaggaatatgtatacaatgaaagatatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaaatgcccatgcgtggcctgtcggctcacaggaatatgtatacaatgaaagatatga 440

                                                                       
Query: 241 cacacttttatccaggtgttaatcccatgcctgttgaagtcgttttaaatccaatccagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacttttatccaggtgttaatcccatgcctgttgaagtcgttttaaatccaatccagg 500

                                                                       
Query: 301 gttttaaccccaccgtagaccatttagataaaagacacacacaacctttatatttataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttaaccccaccgtagaccatttagataaaagacacacacaacctttatatttataat 560

                                                                       
Query: 361 aagccttaatcagcacttgagctgggtagataaccaccctctaagctgttagaatttact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagccttaatcagcacttgagctgggtagataaccaccctctaagctgttagaatttact 620

                                                                       
Query: 421 ttcctatagaaagccccaaattattacttactacttattatatttcatttgggctgttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcctatagaaagccccaaattattacttactacttattatatttcatttgggctgttct 680

                                                                       
Query: 481 taactccaattggccagccctcacaaccatgttttgatgactcagctaacccatggcccc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taactccaattggccagccctcacaaccatgttttgatgactcagctaacccatggcccc 740

                                                            
Query: 541 atggcagcttctccttcctcctgcatcttcttctttttctcatgcttct 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atggcagcttctccttcctcctgcatcttcttctttttctcatgcttct 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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