BAC Information

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BAC

Clone NameMSMg01-138P01
Chromosome13 (Build37)
Map Location 13,514,870 - 13,515,345
singlet/doubletsinglet
Overlap geneLOC664960
Upstream geneHeatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b
Downstream geneNid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138P01.T7 (MSMg01no138_p01.b1)MSMg01-138P01.TJ (MSMg01no138_p01.g1)
ACCAG344473AG344474
length1,398713
length of high quality
(start - end)
---477 (83 - 559)
definitionCHROMAT_FILE: MSMg01no138_p01.b1 PHD_FILE: MSMg01no138_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:08 2005CHROMAT_FILE: MSMg01no138_p01.g1 PHD_FILE: MSMg01no138_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:09 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTAAAAAATAATAAANAATAATATNAAAATNATAATAGATATAATACATC
ATAAAATATATAATTAAANTATTAATAATATGAGGAATTNNNTTGNNTTN
AATNNNTTAAAATAATTAAAATATNCATATATAATAATAGNACATNGAAA
TACNTATTATNNTTACNAAACGTTCNCCTCTTATATTAACCCACNCTAAT
TTCTCATTATAATTAGTAATAAATATATTTGANNTTTTTCGACTAGCGAT
GGTCCACGCGAGTATAGATGCATTCACANGCGATAACCTAAACCTCCAGA
TTATCCCTACACTCATCATTACAATCCACTGTTTACTTTTTCTCTTGTTT
TATATTCTCCCCTACCTCCTACCTTCATNTTATAATCTATCAAAACATTC
CACCTATATTTCACACCACCACATTCCCTATTATTTCTTTATCTTATCTC
CTACACACCACCATTGTCATACATCTCCATCCAATTATACACCTGAACAG
TNTGTAACACCGACATCACAATACACTACACAGCCAGCCCCGTATCACAT
CTTTACCCTCACCGACTAGGCGTCGTTCCAATACGGCGGCTTCCCCATGC
GGATAGACCCACGTCGCGCGGATACTGGGTGANCGAAGTGATCGTACAAT
CGATCATACACTATCACAGCACGCTCTTGTGTCATCATCGGCACGCTTAT
GCATCACCATGTGATCGACACATATGACATCGCCATACTTTACCGCCTCA
TATCGTCAGTACGCAGTCTTATTATCACACTTTTCCCCACTATATATTAT
AATACCTAACACATTTGTCGACGCATCAGCTGCCAACCTATAANCATCAT
AACCATAATCCTCTCACTACCCTCATGATGTTACATCGGCGCCAATCTCA
GTACAACGCGACTGATATGTAGCAGCCCAGTGTATAGAGACGCAATATAC
AGCAGAAGATGTGTAAACGAACAACACTATAAGAGCACACGTAGAGCAAN
AGATAACCACGACGACAAAAAGTTATNTGTGGAGTCAGAGCGCGCTGACA
CGAGAGGCGTGTNAGGTGGTGCATACAATTGTTACCAGCGACACGCCTAT
TAGATGATATACGCCTGCGACGTACCACCTAATGTCATACGCATCACGAC
GCGTGTATACATAACTGCAGTACGATGAAGTACGACTTCACGCTCACTCT
GACCAGGTCGANGCGTCACCGCTNTGTGTGATGTTACAGCGACAAACACG
ACACAACACTATCACAATCGCGGTAATTATGAACGTGAGACAGCGACATA
TGGCTAGACAACGATATTGTCAGCACGCGCCCAGAGCCGCGCCACAGATA
TAACTATGACACGTGGGCGCACCCGTACTGTCATGTCGCGACATAAGC
ACTATNNNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTTTATAAGAGTTG
CCATGGTGATGTCTCGTTACAGCAAAAGAACCCGTAGCTATGACACCTGT
ATTCCTGTAAGTAATCCCAATAAAACTCACTGGTTCACCAAGCTGGGCTT
TGGTGTTATCTGTATTTTGGTCTGTCATGTGCTGAGAAGATGTGTGTATT
TAATCCCTCTGGGGAAAAGTTTTGTCACACAACAACATTGCACAGGAGTA
CCCCAACATGAAGTCAGTAATGAGCTCGCCTACAAGTCTATCTACAGTAA
ATGAGCATTAATAACTCTGCAATAAACAGTTGTAATAAGTAACTCAGTAA
TAAGGTAGTTAATAAACGGTGATTGTTTGGGAGATAAAAAAAAAAGGATC
ACTAACACCTGTAATCATTAAAAAATGCAAATCAAAGCTACCCTAATCCC
AGCACTAGAGGTTGAGAGGCACAGGATAGCCTAGGGTACTTAGAAAGTTC
TAGGATAGCCTAGGCTAGATGGAGGAACTGGAGTATAAATCCCCAGGACT
CATGTAACAAAAGCCAGGAATAGCTATATATACCTATAAACCTGGAGTGC
GAGCAGACACAGGCAGATCCCAGCAGTTCAAAGCAACAGAGGAAGACCCA
ATGTCATTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_p01.g1 MSMg01no138_p01.g1 CHROMAT_FILE:
MSMg01no138_p01.g1 PHD_FILE: MSMg01no138_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:09 2005
         (477 letters)



>mm_chr13_13514670_13515545
          Length = 876

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttctttataagagttgccatggtgatgtctcgttacagcaaaagaacccgtagctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttctttataagagttgccatggtgatgtctcgttacagcaaaagaacccgtagctatg 260

                                                                       
Query: 61  acacctgtattcctgtaagtaatcccaataaaactcactggttcaccaagctgggctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacctgtattcctgtaagtaatcccaataaaactcactggttcaccaagctgggctttg 320

                                                                       
Query: 121 gtgttatctgtattttggtctgtcatgtgctgagaagatgtgtgtatttaatccctctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttatctgtattttggtctgtcatgtgctgagaagatgtgtgtatttaatccctctgg 380

                                                                       
Query: 181 ggaaaagttttgtcacacaacaacattgcacaggagtaccccaacatgaagtcagtaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaaagttttgtcacacaacaacattgcacaggagtaccccaacatgaagtcagtaatg 440

                                                                       
Query: 241 agctcgcctacaagtctatctacagtaaatgagcattaataactctgcaataaacagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctcgcctacaagtctatctacagtaaatgagcattaataactctgcaataaacagttg 500

                                                                       
Query: 301 taataagtaactcagtaataaggtagttaataaacggtgattgtttgggagataaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataagtaactcagtaataaggtagttaataaacggtgattgtttgggagataaaaaaa 560

                                                                       
Query: 361 aaaggatcactaacacctgtaatcattaaaaaatgcaaatcaaagctaccctaatcccag 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aa-ggatcactaacacctgtaatcattaaaaaatgcaaatcaaagctaccctaatcccag 619

                                                                    
Query: 421 cactagaggttgagaggcacaggatagcctagggtacttagaaagttctaggatagc 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cactagaggttgagaggcacaggatagcctagggtacttagaaagttctaggatagc 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 876
Length adjustment: 10
Effective length of query: 467
Effective length of database: 866
Effective search space:   404422
Effective search space used:   404422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)