BAC Information

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BAC

Clone NameMSMg01-139N11
Chromosome13 (Build37)
Map Location 89,579,497 - 89,579,810
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667230, EG435375, Edil3
Downstream geneHapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139N11.T7 (MSMg01no139_n11.b1)MSMg01-139N11.TJ (MSMg01no139_n11.g1)
ACCAG345140AG345141
length702700
length of high quality
(start - end)
517 (48 - 564)550 (77 - 626)
definitionCHROMAT_FILE: MSMg01no139_n11.b1 PHD_FILE: MSMg01no139_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:22 2005CHROMAT_FILE: MSMg01no139_n11.g1 PHD_FILE: MSMg01no139_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTTTTTTTCTCTATTATGACTTTCAAATAATTAGACAACTCT
TATCCAAATTATCATGTTTATAATCCCACTAATTAAACTGCTAATGTGAT
CTAAAATATCTTCACAGAAACATCTGAAATAATATTCGTGCAAATATCTG
AGAACCTGAATTAGTCAAGTTGACACATAAAATTAACTGTCACAGAACAA
AGATTTATCAGCTTTGCAATAGAGCGTGTTCCATTCAGCCGTAGTTAATC
TGCATAGAGACAGTAACAGGGTTTGTCTTTCTGCCTAACATGTAGCACTA
CCTGCATACAAGAATACACGCATTGTATTTTCTTGAGGGTGACACAAATG
CCTTGCATGATGGTTACCCCCTCTTTCATTTCCTATAAATTACACATAAT
TTAAATACTATGATCAAAGTGAAATGTATATATGTATGCATATATACATA
TATGTATATATACATATATATATATACCTATATATATATATATTATGCAA
TCTAGTATTTACCAAGGACACACATACCTTCATGCTATCATAAGAGAAAT
AGTTGATAATCGGAATCCTCTTGCCTATAATTACCCCTATAGTCACAGGT
AACATTAATAACTATCTTTAACTACCATTTCTTTTCCTCTTACTGCTTGT
GA
CTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGATAA
AAGCAATCTACAGCAAACCAGGAACCAACATCAAAGTAAATGGAGAGAAG
CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC
TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC
AACAAAAGGAGATCAAGGGGATACAAATTGGAAAGGAGGAAGTTAAAATA
TCACTTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATT
CCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGGA
TATAAAATTAACTCACACAAGTCAATGGCCTTTCTCTACACAAAGAATAA
ACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAA
ATAATATAAAATTTTACAGATTTAATGAGTGAAACATACCTTTATTTACT
TATTCTCCCATATTTTTTGCTGTAGGCATTGTTGGTAGCATTGATATCTT
TGTAAACTAAGCTAATCTTATAACATTGGCCTGAATGTTATTTTCTGGCC
CTCTGAATTAATTAACTAATTAATCAACTAATTAATTACCTAATTTTCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_n11.g1 MSMg01no139_n11.g1 CHROMAT_FILE:
MSMg01no139_n11.g1 PHD_FILE: MSMg01no139_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:22 2005
         (550 letters)



>mm_chr13_89578861_89579810
          Length = 950

 Score =  600 bits (310), Expect = e-175
 Identities = 313/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 237 agatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacct 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 agatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaaacct 891

                                                                       
Query: 297 gataaacagcttcggtgaagtagctggatataaaattaactcacacaagtcaatggcctt 356
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 890 gataaacagcttcggtgaagtagctggatataaaattaactcaaacaagtcaatggcctt 831

                                                                       
Query: 357 tctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tctctacacaaagaataaacaggctgagaaagaaattagggaaacaacacccttctcaat 771

                                                                       
Query: 417 agtcacaaataatataaaattttacagatttaatgagtgaaacatacctttatttactta 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 agtcacaaataatataaaattttacagatttaatgagtgaaacatacctttatttactta 711

                                                                       
Query: 477 ttctcccatattttttgctgtaggcattgttggtagcattgatatctttgtaaactaagc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ttctcccatattttttgctgtaggcattgttggtagcattgatatctttgtaaactaagc 651

                         
Query: 537 taatcttataacat 550
           ||||||||||||||
Sbjct: 650 taatcttataacat 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)