BAC Information

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BAC

Clone NameMSMg01-140K07
Chromosome13 (Build37)
Map Location 35,246,023 - 35,246,541
singlet/doubletsinglet
Overlap genenone
Upstream gene2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140K07.T7 (MSMg01no140_k07.b1)MSMg01-140K07.TJ (MSMg01no140_k07.g1)
ACCAG345724AG345725
length705704
length of high quality
(start - end)
550 (77 - 626)521 (86 - 606)
definitionCHROMAT_FILE: MSMg01no140_k07.b1 PHD_FILE: MSMg01no140_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:26 2005CHROMAT_FILE: MSMg01no140_k07.g1 PHD_FILE: MSMg01no140_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTAATCTATAAXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGAAT
GCGCGGAATTCTCCACTTTACTCATGTGGGCCTGTTTTTTTCTATGCCTC
CAGCTTCTTTTCAGAAATTATTAATTGTTAATTCATTTCTGTAATAAACA
TGAACCTATTCATGTCATCCAACTATATATGAGTTTGACAGATTGTGTCT
TTCAAAGAAATTATCTGTTTCATTTGTTTTGAACTGTTGACATAAAGTTT
TATGACATTTCTTTACTGTCTTTTAAAATGTCTGTGGGGTGGTAGTGATG
AAGCCTCTTTCACAATTATTACATTGTATTATCTCTTTTTGTTATTGATT
AGATGGCTAGAGGTTTATAAATTATATTGATCTTATGAACCAGCTTTGAT
TTGGATAAATTTCTCTATAAATCATCTGTTTTCAGTTTTATTAATTGATG
CCCTGAATTTTCTTTTCCTTTTCCTTTTTCCTTTTTCCTTTTCCTTTTCC
TTTTCCTCTTCCTCTTCCTCTTTCTCTTTATCTCTCTTATTCTTTTTCTT
TTTCTTTTTCTTCTCCTTTTTCTTTTTCTTTTTCTTTTCTTGGGCTCATG
TTGCATTTATTTTCTCTCTAGCCTCCTAGGTGGAAATGCAGACTGCTTAT
TTCATGTCTTTCTTTTGCCTTATACATGTTCCCAATGCTATGAATTGCCC
TCTAT
NTTTTCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTCCAGCACCAT
GTTTATCTGGATCCTGCCATGCTTCCCACCATGATGATAGTGGACTGAAC
CTCTGAAACTGTTCGCAGCCTCAATTAAATGTTGTCCCTATAAAGTTGCC
TAGGTCATGTTGTCTCTTTACAGTAATGAAACCCTAACTAAGACAGTGAC
CTACCAGAGTGACTCTTGATCTCCATTTCTGAAGCAAGACAGGATCGTGT
AATGCCAATCCTCTGTGTCACACAGTGGAGATACAGGCAGTAGCATTTGC
CTGGCGATGAATCTCTTGGTCTTTGTCTCTTGTGAGACTGATGCCATTCA
CAGTCACCATGTTGCTCACTGAAACAGCTCATTCAGTGCCACTTTTCAGC
AGCACATTTTCAAGTGAAATAATGCCCCTTTGCAGGTGTCTTGATGGCAA
ATGTCAACAAAAGCAGATACAATGGCTTCCAATTTCCTGCCGAGCATTTG
CTCTTACTGGCTCAGCACTTGTATAGCTGCAGGCAATCAGTGGTGTTACA
GACTGGGTATAGTAAGGGGTGGCAGGGATTATGATATGGTCTTACTATTT
TATTCAGCAAGTGCTCTGGCCTAGCGTCTGCTCTCTGGTAAGCAGATGCT
GAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_k07.g1 MSMg01no140_k07.g1 CHROMAT_FILE:
MSMg01no140_k07.g1 PHD_FILE: MSMg01no140_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:26 2005
         (521 letters)



>mm_chr13_35245823_35246743
          Length = 921

 Score =  996 bits (515), Expect = 0.0
 Identities = 518/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttccagcaccatgtttatctggatcctgccatgcttcccaccatgatgatagtggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttccagcaccatgtttatctggatcctgccatgcttcccaccatgatgatagtggac 260

                                                                       
Query: 61  tgaacctctgaaactgttcgcagcctcaattaaatgttgtccctataaagttgcctaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacctctgaaactgttcgcagcctcaattaaatgttgtccctataaagttgcctaggt 320

                                                                       
Query: 121 catgttgtctctttacagtaatgaaaccctaactaagacagtgacctaccagagtgactc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgttgtctctttacagtaatgaaaccctaactaagacagtgacctaccagagtgactc 380

                                                                       
Query: 181 ttgatctccatttctgaagcaagacaggatcgtgtaatgccaatcctctgtgtcacacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatctccatttctgaagcaagacaggatcgtgtaatgccaatcctctgtgtcacacag 440

                                                                       
Query: 241 tggagatacaggcagtagcatttgcctggcgatgaatctcttggtctttgtctcttgtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggagatacaggcagtagcatttgcctggcgatgaatctcttggtctttgtctcttgtga 500

                                                                       
Query: 301 gactgatgccattcacagtcaccatgttgctcactgaaacagctcattcagtgccacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactgatgccattcacagtcaccatgttgctcactgaaacagctcattcagtgccacttt 560

                                                                       
Query: 361 tcagcagcacattttcaagtgaaataatgcccctttgcaggtgtcttgatggcaaatgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagcagcacattttcaagtgaaataatgcccctttgcaggtgtcttgatggcaaatgtc 620

                                                                       
Query: 421 aacaaaagcagatacaatggcttccaatttcctgccgagcatttgctcttactggctcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaaaagcagatacaatggcttccaatttcctgccgagcatttgctcttactggctcag 680

                                                  
Query: 481 cacttgtatagctgcaggcaatcagtggtgttacagact 519
           ||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 cacttgtatagctgcaggcaatcaggggtgttacagact 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)