Query= MSMg01no140_n14.b1 MSMg01no140_n14.b1 CHROMAT_FILE:
MSMg01no140_n14.b1 PHD_FILE: MSMg01no140_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:42 2005
(242 letters)
>mm_chr13_89872606_89873248
Length = 643
Score = 418 bits (216), Expect = e-121
Identities = 234/240 (97%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 4 gaattcattatttaccag-atgattaaaagaagttttcctatctagtttgaattaatatt 62
|||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 gaattcattatttaaaagtatgattaatagaagttttcctatctagtttgaattaatatt 384
Query: 63 caaggattaatcatatttaatgattttatgacccaatattcttcttgcctatgaaattaa 122
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 caaggattaatcatatttaatgattttatgactcaatattcttcttgcctatgaaattaa 324
Query: 123 tgtcttattaatttcattaactaattgccattaagaaagatgtatagtcacagacctaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgtcttattaatttcattaactaattgccattaagaaagatgtatagtcacagacctaca 264
Query: 183 agccatagcctattgttgtattgctttataagaaatccagaaatgctatgaggttcccag 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agccataacctattgttgtattgctttataagaaatccagaaatgctatgaggttcccag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space: 147722
Effective search space used: 147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no140_n14.g1 MSMg01no140_n14.g1 CHROMAT_FILE:
MSMg01no140_n14.g1 PHD_FILE: MSMg01no140_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:42 2005
(559 letters)
>mm_chr13_89766376_89767334
Length = 959
Score = 988 bits (511), Expect = 0.0
Identities = 547/561 (97%), Gaps = 8/561 (1%)
Strand = Plus / Plus
Query: 1 ctcacactagtggtcctgagcctctctcttctcacctgctcatcatttccagccctttcc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcacactagtggtccagagcctctctcttctcacctgctcatcatttccagccctttcc 260
Query: 61 ttcacttcttttgtccatacctcccagttctctcctcgtgttggttacaaaggccaactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcacttcttttgtccatacctcccagttctctcctcgtgttggttacaaaggccaactg 320
Query: 121 agatgggtgttgtaagaataagcatcacctc-ggttgggaaagtcctctcctaagtatgg 179
||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||
Sbjct: 321 agatgggtgttgtaagaataagcatcacctcaggt-gggaaagtcctctcttaagcatgg 379
Query: 180 cttgacaaactaagcaatagctgaagttcaggtccccttatacctggtgcctctggtaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttgacaaactaagcaatagctgaagttcaggtccccttatacctggtgcctctggtaag 439
Query: 240 atttgctatggggccttaagtcgatgccttctctatggattcaagtttatttattttacg 299
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttgctatggagccttaagttgatgccttctctatggattcaagtttatttattttacg 499
Query: 300 ttagtccagttcagggttctgtgaagattcagtaaggaaagctatttatctaccctgggt 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttagtccagttcagagttctgtgaagattcagtaaggaaagctatttatctaccctgggt 559
Query: 360 caagataacattccgacctatccaaaacataaaggaattaatccagttatgccaggcagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caagataacattccgacctatccaaaacataaaggaattaatccagttatgccaggcagt 619
Query: 420 tatctggccaatggacccc-caccccaaccccaggaaggtaagttcaccttaaatcctaa 478
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatctggccaatggaccccgc-ccccaaccccaggaaggtaagttcaccttaaatcctaa 678
Query: 479 cagttagacaggagaaatagttatcccttgagtgatgtactttccttcccagaattcctg 538
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cagttag----gagaaatagttatcccttgagtgatgtactttccttcccagaattcctg 734
Query: 539 ccccttggtgcacatagagcc 559
|||||||||||||||||||||
Sbjct: 735 ccccttggtgcacatagagcc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
