BAC Information

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BAC

Clone NameMSMg01-141G10
Chromosome13 (Build37)
Map Location 32,470,191 - 32,470,443
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042491, Foxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
Downstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141G10.T7 (MSMg01no141_g10.b1)MSMg01-141G10.TJ (MSMg01no141_g10.g1)
ACCAG346283AG346284
length1,2991,283
length of high quality
(start - end)
258 (146 - 403)427 (133 - 559)
definitionCHROMAT_FILE: MSMg01no141_g10.b1 PHD_FILE: MSMg01no141_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:45 2005CHROMAT_FILE: MSMg01no141_g10.g1 PHD_FILE: MSMg01no141_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTGGCATTGGGCGCTATAGACTCACTATGGGAGAGGATCCGCGGA
ATTCAGTTTGAATAGAATTTTCTTTTAGAGGTAGNGAGANGNTGATAATC
AGNAGGAATGGCCCTGTGAGGCCTTTTGACCCCCAAGGNTAAGGNTAGAG
ACCCAGATTTAGTGATTGGGTAGACTTGGGGTCTGAGGGGCAGCAAAAAT
GAGAACTTGGAAGAACAGTAATTGGACTGAGGTAGACAAATGCTACTCAG
GAGAGGGGAGCTTGAAAGTACAGAGCATAGAAGCAGAATGTTAGATTACA
TCCATAGCTGAAGTAGGAGGAAAAGGGGGCACCAAAGAGTTTACAAGGGC
CAGAGCTTGCTCTAGTGATCACCAAGGGTGGAAATGAAGCCAACTCCCTT
TGTTTTTTTTTAGCCTGGGCCCTAAGAGATCTGTTAGTAGTTCCCATTCC
TGAGTGTTCCAATCCAGCCAGCATTGTTCCATCCTGCTGCAGCTGCTCTC
CTCCTCCTGTTTTCTTCTGTAGTTCTTCTTCCCAACAGTTTGGTTCTTGT
CTGTGATGATTTCCTGCCCATAAGATAATTTATATTTTGATTATCAGTTG
GATGAGCTTTATGTATTACTTATTTTGTGATTGTTATTTGTTTAATTTGA
AGTTGTTTTTTATTGTTTTTGATAAATTTTTTCTTTTGTTTTTATTTATT
TATTTTTGTTCTTTTTTATTTATTTAATTTTTTTATTTTTTTTTTTCTTT
TATCTTATTTTTGTATTACAACTTTCTATATTTTTTTTTTTTCTTTTTAT
TTTTTTTTTTATAATTATTTTTTATTTTTTTTTTTTTCTTTTATACTATT
ATTTATATATTTTTTTCTTTATTTTTTCTATTTTTTTTATTTAATTTTAT
TTTTTTTTTTTTTTTTTTATTTTTATACTTTTTTTTTTTATTGTTTAATT
TTAATATTTTGTCTTTATTTTTTTTTTTTTTTTTTTTTCTTTATCTTGTG
TTATTTTTATTTTTTTATTTCTTCTTTCTTTTATATTGTATTTTTTAATA
TTTTTCTTATTTTTTTTTTTTATTTTTTTATTTTTTTTTTTTTTTCTATC
TTTTCTTTATTTTATTCTTTTCCTTATATTTGTTATCTTTTTCTTCATCT
CATTTATTTTTTCGTTAATTATTTTTTATATTATTATCATTATTTACATT
TTCATTATTTATATTTCTACCATTTATCTGTCTAATTAATCTTTTCCTGT
CCTACTCTTCTTCTTTATATCCTTACATCTCATTATCACTTTCTTTACA
TTTTTTGATATGGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCCCTAATAGTTTTGAGGNTGGNCTCCATACA
GTACCAGGTCACCTTGAACTACACAGTACCCCCCTGTCTCAAGACTGCCA
TATCCAGGGATCCATCCCATAATTAGCCTCCAAATGATGAGACCATTGCA
TACACTAGCAAGCGTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTG
AGACTAGGCCGGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCAGCT
ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGGGAAAGTATCCAA
GGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACAACATTATGAACTAA
CCATTTTTTCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGC
CTACTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTAT
ATGCCTCAGTACAGGGGAATGCCAGGGCCAAAAAGTGGGAATGGGTGGGT
AGGAGAGTGGGGTTTCTATTTTTTTTTTCTTTTTTTTTTTTTTTTTATTT
TCTTTTCTCTTTCTTTATCTTTTTATTCTTTTTTCCTTCTTTTATTTTTT
TTCTATTTTTTATTTTCTCCCTTTTTTCCTTCTTTTTCTTTCTTTTTTTT
ACTTTTTTCTCTTTCTTATTTATTTTTTTTCCCTTATTATTTTTTCCTCT
TTATTTTTATTTTTAATTCTTATTTCTTTCTTATTTTTTTTTCTTCTTCT
TCTTTTTTTCTTTTTTATTTTTCTTTTCTATTTATCTATTTCTTTACTTT
TTATATTTTTTTTTCTTATTTCTATTTTTTCTTTTTTTTTTTATTTTTCT
TTTTTTTTTATCTTTTTATTTATTTTTTTATTTTTCTATAATTCTTTTTT
TTTTCTTTTTCTTTATTTCCTTTTTATTTTTATTTTTTTTTATTTTCTTT
CTATCTTTTTCCTTTTACTTATTTTTCATTTATTTATTTTTTTTTTTTTT
CTCTAATTCATTTTTTCTTGATCACTTCTATTTTTATCTTTTCCTCTTTC
ACTATTTTTTTTTCTATTCTTTCTTCCTTTTCTTTTTTCCTCTTTATTTT
TAATTATTATCTCTTTTTATTATCATTCATCTATTACTTAATACTTTTCT
CAACAATTATCTTATTTTATTCTATTATCTCTTTCACCATTCATCTTTTT
TCTATTCTGTCTCTAATTCTCTGTCTTGTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_g10.b1 MSMg01no141_g10.b1 CHROMAT_FILE:
MSMg01no141_g10.b1 PHD_FILE: MSMg01no141_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:45 2005
         (258 letters)



>mm_chr13_32469987_32470644
          Length = 658

 Score =  435 bits (225), Expect = e-126
 Identities = 246/253 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gacccagatttagtgattgggtagacttggggtctgaggggcagcaaaaatgagaacttg 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gacccagatttagtgattgcgtagacttggggtctgaggggcagcaaaaatgagaacttg 264

                                                                       
Query: 65  gaagaacagtaattggactgaggtagacaaatgctactcaggagaggggagcttgaaagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagaacagtaattggactgaggtagacaaatgctactcaggagaggggagcttgaaagt 324

                                                                       
Query: 125 acagagcatagaagcagaatgttagattacatccatagctgaagtaggaggaaaaggggg 184
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagaacatagaagcagaatgttagattacatccatagctgaagtaggaggaaaaggggg 384

                                                                       
Query: 185 caccaaagagtttacaagggccagagcttgctctagtgatcaccaagggtggaaatgaag 244
           ||||| |||||||| ||||||| ||||||||||||||||||||||| || ||||||||||
Sbjct: 385 caccagagagtttagaagggcccgagcttgctctagtgatcaccaacggcggaaatgaag 444

                        
Query: 245 ccaactccctttg 257
           |||||||||||||
Sbjct: 445 ccaactccctttg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 658
Length adjustment: 9
Effective length of query: 249
Effective length of database: 649
Effective search space:   161601
Effective search space used:   161601
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)