Query= MSMg01no142_b15.b1 MSMg01no142_b15.b1 CHROMAT_FILE:
MSMg01no142_b15.b1 PHD_FILE: MSMg01no142_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:19 2005
(519 letters)
>mm_chr13_29251585_29252503
Length = 919
Score = 944 bits (488), Expect = 0.0
Identities = 514/528 (97%), Gaps = 9/528 (1%)
Strand = Plus / Plus
Query: 1 ctatgtatgagcccagcggccagaggaggacataaagtgtcctgctcaatcatgctctaa 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgtatgagcacagcggccagaggaggacataaagtgtcctgctcaatcatgctctaa 260
Query: 61 cttacagctttgagacagtctcccactgagcctggagctagatgaacagccagcaacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttacagctttgagacagtctcccactgagcctggagctagatgaacagccagcaacaag 320
Query: 121 cagggaccctccttgggccactcatgcagcttctctcagcattttacttgggtaccgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggaccctccttgggccactcatgcagcttctctcagcattttacttgggtaccgggg 380
Query: 181 attagaacccggggctttgggctgacacagcaagtacctttccccaccaagccatttctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagaacccggggctttgggctgacacagcaagtacctttccccaccaagccatttctc 440
Query: 241 acgctcctcaaggatctctttcacaagggcactaatcctgcttcttatagctctcatccg 300
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 441 acgctcctcaaggatctctttcacaagggcactaatcctgcttctgagagctctcatccg 500
Query: 301 tgatctaattcccctcacactgtactctcgaaggtctttatagaactcagaattctagga 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgatctaattcccctcacactgtactctcgaaggtctttatagaaatcagaattctagga 560
Query: 361 ggacagagccattcctatttgctctgcggagatatccagataggaaccggtatcatggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacagagccattcctatttgctctgcggagatatccagataggaaccggtatcatggag 620
Query: 421 tcctctgagcaatggtggacatccctctctgagctgaatagaggtg---------acgat 471
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tcctctgagcaatggtggacatccctctctgagctgaatagaggtgcagatactgacgat 680
Query: 472 ctgaaagggagatgttcatgtacgttctcactgtctcccactaccaaa 519
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 ctgaaagggagatgttcatgtacattctcactgtctcccactaccaaa 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_b15.g1 MSMg01no142_b15.g1 CHROMAT_FILE:
MSMg01no142_b15.g1 PHD_FILE: MSMg01no142_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:20 2005
(407 letters)
>mm_chr13_29395328_29396134
Length = 807
Score = 741 bits (383), Expect = 0.0
Identities = 401/407 (98%)
Strand = Plus / Minus
Query: 1 agccacttcatccagagaccatttgaaggatgcattaaggccatcacgctggggtgaaga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 465 agccacttcatccagagaccatttgaaggatgcaataaggccatcacgctggggtgaaga 406
Query: 61 ttctctttggaatgagttcatgacacattggccacacttgagaggttggaggcatggggt 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 405 ttctctttggaatgagttcatgacacattggtcacacttgagaggttggaggcatggggt 346
Query: 121 gtagataccagttgtagaatacaactatacagaaaacaggcctcttctctcccgctttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtagataccagttgtagaatacaactatacagaaaacaggcctcttctctcccgctttcc 286
Query: 181 tcactcagtattatttgcatcaatactgccttacaggtattaatccaatatcattctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcactcagtattatttgcatcaatactgccttacaggtattaatccaatatcattctcct 226
Query: 241 acttccactcccaccccaccccttgaaatgtttccagctctggccattgggagatcattc 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 225 acttccactcccaccccaccccttgaaataactccagctctggccattgggagatcattc 166
Query: 301 acatggctccggggtggcgtcctattgatatatggcatcagttggtaatctgtttggtct 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acatggctccggggtggtgtcctattgatatatggcatcagttggtaatctgtttggtct 106
Query: 361 tctggcactgcaggagaccctagcaaatctcctgcactttctgtccc 407
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tctggcactgcaggagaccctagcaaatctcctgcactttctgtccc 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space: 317604
Effective search space used: 317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
