Query= MSMg01no142_c15.b1 MSMg01no142_c15.b1 CHROMAT_FILE:
MSMg01no142_c15.b1 PHD_FILE: MSMg01no142_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:28 2005
(266 letters)
>mm_chr13_36551738_36552403
Length = 666
Score = 499 bits (258), Expect = e-146
Identities = 264/266 (99%)
Strand = Plus / Minus
Query: 1 ctagctgggcacttcaaatagatgctaactgagctgtatatctgagtacaggtatcactg 60
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 466 ctagctgggcacttcaaatggatgctaactgagctgtatgtctgagtacaggtatcactg 407
Query: 61 tgagggactgctgtgcaggaaagggagtgttaagtctctgagtcaggtaaaagacacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tgagggactgctgtgcaggaaagggagtgttaagtctctgagtcaggtaaaagacacaag 347
Query: 121 agtcttggaggagtctgggcactcagttggggggcaggaaattcgagaatctttgttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtcttggaggagtctgggcactcagttggggggcaggaaattcgagaatctttgttcta 287
Query: 181 aatgaggctgtgtcatggcactttcctagctgcaggtcagagatggtctgagtgtccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aatgaggctgtgtcatggcactttcctagctgcaggtcagagatggtctgagtgtccctg 227
Query: 241 gtgacaaaccactgaaaagctgggag 266
||||||||||||||||||||||||||
Sbjct: 226 gtgacaaaccactgaaaagctgggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no142_c15.g1 MSMg01no142_c15.g1 CHROMAT_FILE:
MSMg01no142_c15.g1 PHD_FILE: MSMg01no142_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:28 2005
(560 letters)
>mm_chr13_36406198_36407158
Length = 961
Score = 1035 bits (535), Expect = 0.0
Identities = 557/569 (97%), Gaps = 9/569 (1%)
Strand = Plus / Plus
Query: 1 cagagtcatttcaggggccgatgttccaaggttgcggtctgtcttccttattaaatctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagtcatttcaggggccgatgttccaaggttgcggtctgtcttccttattaaatctgt 260
Query: 61 actctctggtctttcagaccatcgaggctttgtttgtacatatttatttttattgttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actctctggtctttcagaccatcgaggctttgtttgtacatatttatttttattgttttt 320
Query: 121 ttt-ctaggtcctcaagttataaaagtaagataagcagggctgtcattacttcaagtgct 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttctaggtcctcaagttataaaagtaagataagcagggctgtcattacttcaagtgct 380
Query: 180 gattgagaaccaaaaataaactagggataggtcagggccagatatcatgcaagggacttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgagaaccaaaaataaactagggataggtcagggccagatatcatgcaagggacttg 440
Query: 240 cggccaggtatatatgctcagcaatcagtttctttgcatatattggttaaacaagtttca 299
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 441 cggccaggtatatatgctcagcaatcaggtcctttgcatatattggttaaacaagtttca 500
Query: 300 gaacaggggacagtaaacataggctattaacactctagttttaatagtgaaaagccaact 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaacaggggacagtaaacataggctattaacactctagttttaatagtgaaaagccaact 560
Query: 360 aaagtaaaaaatggaaggaggtggggagttgaattgttttcatgaatagaaggcctgtgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagtaaaaaatggaaggaggtggggagttgaattgttttcatgaatagaaggcctgtgg 620
Query: 420 ggtcagaggcagctggatcagaagcagagtaagtgtcagagttcacgtctgtcccttccc 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtcagaggcagctggatcagaagcagagtaagtgtcagagttcacgtctgtcccttccc 680
Query: 480 acccaaggtagttcactgtctgtggttatgt--------acagtcttgcaatcagtttca 531
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 acccaaggtagttcactgtctgtggttatgtgctgacgtacagtcttgcaatcagtttca 740
Query: 532 gaggcattaaagtgaagtgaaacaagaac 560
|||||||||||||||||||||||||||||
Sbjct: 741 gaggcattaaagtgaagtgaaacaagaac 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 961
Length adjustment: 10
Effective length of query: 550
Effective length of database: 951
Effective search space: 523050
Effective search space used: 523050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
