BAC Information

Click to search

BAC

Clone NameMSMg01-142J15
Chromosome13 (Build37)
Map Location 66,205,013 - 66,205,566
singlet/doubletsinglet
Overlap genenone
Upstream geneHiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434
Downstream geneLOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142J15.T7 (MSMg01no142_j15.b1)MSMg01-142J15.TJ (MSMg01no142_j15.g1)
ACCAG347171AG347172
length1,2411,264
length of high quality
(start - end)
477 (135 - 611)550 (92 - 641)
definitionCHROMAT_FILE: MSMg01no142_j15.b1 PHD_FILE: MSMg01no142_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:29 2005CHROMAT_FILE: MSMg01no142_j15.g1 PHD_FILE: MSMg01no142_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:29 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGGTTCTNNNNNNCACATTGGGCGCTATAGACTCACTAAGGGAGAGGATC
CGCGGAATTCTCAGCTCTCTCTGTCCCCTATAATCCTCATCTCTGTCTCT
CCCCAGTGAGAATCCCCCTTAGCTCAGGCCGGACCTGGTTATTTTACACA
GACTGTGAGAAGTCCTGAGCCGAGTAGAGGACAGAGGTTCCCACGAGTCA
TCTTCATCTTCTGAGTCATTGTTCACACTCACACGGACACAGCCTGACAA
TTCACCCCATGGCTGAGCTCGGGGGACACCAGCAACAGAGCAAGCAGGAC
CCTGTGCTGTCTTTTCATGTTTTTCAGGGGGTCCTGTGGACTGGTTCCTG
TTTAAATGCCCACAGTAGGCCCTTTATGTTCACAATGTTTTGTGAATTTA
TTTTCTGATTCAGATTCCTCCTCTGAGGTTGGTTTCTACTCTTGAATCGC
CAGGGTCCTGTCCTGAGCCACTTTTCAGGCTTTTCTGTGGAGGAATAAAC
ATGTTTCTCAACCCTGAGAGAGGTCCTGGCAGCACATGGGAGTCCCCTCA
GTCCTGGGCACCTGTGGCTTTTCTGTCCCCTGCCTGTGCCTTCCTCAGCA
GGTTCCCCACAGCAGACACTGTGAGGGGCAGGTCTGGGCCTCCATTCCTT
GTGAACTGGATTTTAATATCTCACCCTGCTCTCTCTCACAAGTCCACATC
TAACATTCTGACTGAAGACAGTTAGGTGCCAGTGTCCACCTCAGTGCCTG
TCTCTTTAAGAGTCTGCTCCATAATGTTTGTGAGGAACTCTGTCTGTCGA
CTCATTGCGTGCCATCCTGAGAGATGCCTTCTTAATTGACCCACCCCAAA
TCTGACCTAATATCGGTGCTCTTGGTGTTTTCCATCCTACCGTTTAGTCT
TGTATTCCCTTTTCCTTGCCCCTCTGTTGTAAAATTTGGTTCTATATCTA
TTAATGTCTTGTTCTTGTTCTTCCCTGGGTCACTTAATTTTCTCCCATTT
CCCCTTGTTCTGTCTGTTTCTTAATATATCCCTTCTCTGTTTGTATCCCT
TCTCTTTACTCTTTTATTTTCTACTTTTCTCCTATTTTTTTCTTTATTCC
TTTTTGTTCCTTATTTCTCTTCTCTTTTCTCTTCTCTTTTCTTCTCTTCT
TTCATTATTTTCTTTTTCTTCATTTTGTTCATCTTATTTCATCCCTCTTC
TTCTNTCTTCTTTGTCTTCTCTTACTTTCGTTTCTTCTTTA
CCAGTCCTTNNNNNACACATGGGAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAAGCCGCGTTAGGATAT
TCATTATGGAATGATGTCCCTTTTGTCATGACAGGCCTTCTCTGTGTAAC
AGCCCAGCTTTCCTAGAACTTGCTTTGCAGACCAGGCTGACCTCTAACTC
ACAGACATGCTTGCCTCTGCCTCCTGAGTGCTGGGATAAAAGGCATGCAC
CACTATAACCCAGCTAGATAATCTTTTTAGTCAGACGACAAACTAAGTCA
GAAATTGTGGTAGGATGAATGGTGTGGGTGCTGTGGTCCCAGGGTGGGGC
CTGGTAGACAGTTAGGGAGGCTCCCATACAGCTCTGACCGTATGAGTGCC
CATGTCTGTGTTATACTGAGTGTCTTAGTCAGGGTTTCTATTCCTGCACA
AACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCGGCTTA
CACTTCCATACTGCTGTTCATCACCAAGGAAGTCAGGACTGGAACTCATG
CAGGTCAGGAAGCAGGAGCTCATGCAGAGGCCATGGAGGGATGTTCTTTA
CTGGCTTGCCTCACCTGGCTTGATCAGCCTGCTCTCTTATAGAACCCCAG
ACTACCAGCTCAGAGATCTTCCCACCCACAAGGGGTCTTTCCCCCTTGAA
CACTAATTGAAAAAATGCCTTATAGTTGGCTCTCATGTAGGCATTTCCTC
AACTGAAGCTCCTTTCTCTGTGATAACTCCAGCTGCTGTTAGTTGACTCT
ATATTACCCAGTACTCTGAGTATCCCAAGATACACGTTCCTTGCCCATTA
TTGATCCTTGACTTTGTCCTGATTCCTTTTGTTGCATGCCTTTCCCCTCC
TGTACAAAATTCCTGTCCGTTGTTTATCCTCCCTTTTTCACTCACTTAAT
TTTTCACCATACCCTTAGCCTTCTACTCCTTTCCCTTCTTGTTCACATTT
TTTCATTTTTCCTTCTGTATTTATCTCTCTATCTCTTTCTCTTTCTTCCC
CCCTCTTTTCCTTTCCCTGTCTCCTCCTACCCCTATTTCAAATACTTTCT
TTCTCTTCCTCCTCCTCTCTGTTTTCCTATTTTTATCTCACTGTTCTATA
ATCCTTTCCTCTGTTTACTCTCCTTATTCTCTTTATATTCACTTATACTT
ACCATTAACCTCTCCTACTCTCCTCTGCACTCTCTACTCCTCTTCTTCCT
CACTTCTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_j15.g1 MSMg01no142_j15.g1 CHROMAT_FILE:
MSMg01no142_j15.g1 PHD_FILE: MSMg01no142_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:29 2005
         (550 letters)



>mm_chr13_66204887_66205836
          Length = 950

 Score =  934 bits (483), Expect = 0.0
 Identities = 535/557 (96%), Gaps = 10/557 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaggatattcattatggaatgatg----tcccttttgtcatgacaggccttctctgtgt 56
           |||||||||||||||||||||||||    |   |||||||||||||||  ||||||||||
Sbjct: 680 ttaggatattcattatggaatgatgttttt---ttttgtcatgacagggtttctctgtgt 624

                                                                       
Query: 57  aacagcccagctttcctagaacttgctttgcagaccaggctgacctctaactcacagaca 116
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aacagcccagctctcctagaacttgctttgcagaccaggctgacctctaactcacagaca 564

                                                                       
Query: 117 tgcttgcctctgcctcctgagtgctgggataaaaggcatgcaccactataacccagctag 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgcttgcctctgcctcctgagtgctgggataaaaggcatgcaccactataacccagctag 504

                                                                       
Query: 177 ataatctttttagtcagacgacaaactaagtcagaaattgtggtaggatgaatggtgtgg 236
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ataatctttttagtcagatgacaaactaagtcagaaattgtggtaggatgaatggtgtgg 444

                                                                       
Query: 237 gtgctgtggtcccagggtggggcctggtagacagttagggaggctcccatacagctctga 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtgctgtggtcccagggtggggcctggtagacagttagggaggctcccatacagctctga 384

                                                                       
Query: 297 ccgtatgag---tgcccatgtctgtgttatactgagtgtcttagtcagggtttctattcc 353
           |||||||||   ||  ||||||||||  ||| ||||||||||||||||||||||||||||
Sbjct: 383 ccgtatgagacatgggcatgtctgtggcatattgagtgtcttagtcagggtttctattcc 324

                                                                       
Query: 354 tgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttattcggcttacact 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcacaaacatcatgaccaagaagcaagttggggaggaaagggtttattcggcttacact 264

                                                                       
Query: 414 tccatactgctgttcatcaccaaggaagtcaggactggaactcatgcaggtcaggaagca 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tccatactgctgttcatcaccaaggaagtcaggactggaactcatgcaggtcaggaagca 204

                                                                       
Query: 474 ggagctcatgcagaggccatggagggatgttctttactggcttgcctcacctggcttgat 533
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 203 ggagctgatgcagaggccatggagggatgttctttactggcttgcctcacctggcttgct 144

                            
Query: 534 cagcctgctctcttata 550
           |||||| ||||||||||
Sbjct: 143 cagcctactctcttata 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)